Hb_004994_340

Information

Type -
Description -
Location Contig4994: 265503-268115
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45663: 263787-267512 , PASA_asmbl_45664: 267966-268173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_340 0.0 - - -
2 Hb_009119_030 0.1604388123 - - GMFP4 [Medicago truncatula]
3 Hb_002411_130 0.1968146461 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
4 Hb_002518_300 0.1981814486 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
5 Hb_020805_010 0.2002391185 - - protein with unknown function [Ricinus communis]
6 Hb_000159_110 0.204456395 - - PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica]
7 Hb_002320_070 0.2073868045 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003243_020 0.2078456103 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
9 Hb_000366_190 0.2148409775 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
10 Hb_007137_060 0.2148505507 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
11 Hb_121467_010 0.2163101524 - - tubulin-specific chaperone E, putative [Ricinus communis]
12 Hb_002235_120 0.2178918569 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
13 Hb_101020_010 0.2187473436 - - -
14 Hb_002708_020 0.219052049 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
15 Hb_001882_110 0.2210540972 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
16 Hb_000243_090 0.2248698278 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
17 Hb_001901_080 0.226546899 - - PREDICTED: xylose isomerase [Jatropha curcas]
18 Hb_001442_030 0.2266670166 - - Peroxisome biogenesis factor [Medicago truncatula]
19 Hb_000035_310 0.2271527399 - - hypothetical protein POPTR_0006s28170g [Populus trichocarpa]
20 Hb_001005_150 0.2275304377 - - -

Gene co-expression network

sample Hb_004994_340 Hb_004994_340 Hb_009119_030 Hb_009119_030 Hb_004994_340--Hb_009119_030 Hb_002411_130 Hb_002411_130 Hb_004994_340--Hb_002411_130 Hb_002518_300 Hb_002518_300 Hb_004994_340--Hb_002518_300 Hb_020805_010 Hb_020805_010 Hb_004994_340--Hb_020805_010 Hb_000159_110 Hb_000159_110 Hb_004994_340--Hb_000159_110 Hb_002320_070 Hb_002320_070 Hb_004994_340--Hb_002320_070 Hb_009119_030--Hb_002320_070 Hb_009119_030--Hb_002411_130 Hb_000130_190 Hb_000130_190 Hb_009119_030--Hb_000130_190 Hb_009119_030--Hb_000159_110 Hb_001901_080 Hb_001901_080 Hb_009119_030--Hb_001901_080 Hb_121467_010 Hb_121467_010 Hb_009119_030--Hb_121467_010 Hb_002411_130--Hb_000159_110 Hb_001752_040 Hb_001752_040 Hb_002411_130--Hb_001752_040 Hb_002411_130--Hb_121467_010 Hb_003376_070 Hb_003376_070 Hb_002411_130--Hb_003376_070 Hb_001767_120 Hb_001767_120 Hb_002411_130--Hb_001767_120 Hb_003243_020 Hb_003243_020 Hb_002518_300--Hb_003243_020 Hb_007416_370 Hb_007416_370 Hb_002518_300--Hb_007416_370 Hb_099698_010 Hb_099698_010 Hb_002518_300--Hb_099698_010 Hb_008406_130 Hb_008406_130 Hb_002518_300--Hb_008406_130 Hb_000040_050 Hb_000040_050 Hb_002518_300--Hb_000040_050 Hb_004712_110 Hb_004712_110 Hb_002518_300--Hb_004712_110 Hb_000755_080 Hb_000755_080 Hb_020805_010--Hb_000755_080 Hb_000264_010 Hb_000264_010 Hb_020805_010--Hb_000264_010 Hb_000720_070 Hb_000720_070 Hb_020805_010--Hb_000720_070 Hb_000261_520 Hb_000261_520 Hb_020805_010--Hb_000261_520 Hb_027420_050 Hb_027420_050 Hb_020805_010--Hb_027420_050 Hb_000375_030 Hb_000375_030 Hb_020805_010--Hb_000375_030 Hb_083043_010 Hb_083043_010 Hb_000159_110--Hb_083043_010 Hb_000160_220 Hb_000160_220 Hb_000159_110--Hb_000160_220 Hb_000159_110--Hb_001752_040 Hb_058702_010 Hb_058702_010 Hb_000159_110--Hb_058702_010 Hb_005408_020 Hb_005408_020 Hb_002320_070--Hb_005408_020 Hb_073973_160 Hb_073973_160 Hb_002320_070--Hb_073973_160 Hb_010925_020 Hb_010925_020 Hb_002320_070--Hb_010925_020 Hb_002307_350 Hb_002307_350 Hb_002320_070--Hb_002307_350 Hb_003894_040 Hb_003894_040 Hb_002320_070--Hb_003894_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.45792 3.10243 7.86127 9.11423 23.061 21.2278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.20851 1.17198 0.719805 1.10243 1.53246

CAGE analysis