Hb_004994_380

Information

Type -
Description -
Location Contig4994: 275747-278307
Sequence    

Annotation

kegg
ID pop:POPTR_0002s16020g
description POPTRDRAFT_1072288; hypothetical protein
nr
ID KDP28639.1
description hypothetical protein JCGZ_14410 [Jatropha curcas]
swissprot
ID Q8GWP5
description Riboflavin biosynthesis protein PYRD, chloroplastic OS=Arabidopsis thaliana GN=PYRD PE=1 SV=1
trembl
ID A0A067KA00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14410 PE=4 SV=1
Gene Ontology
ID GO:0009570
description riboflavin biosynthesis protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45670: 275692-278182
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_380 0.0 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
2 Hb_010710_070 0.0576055766 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
3 Hb_000076_130 0.0733872931 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
4 Hb_001014_160 0.0760779794 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
5 Hb_188063_020 0.0777716863 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001141_020 0.07918324 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
7 Hb_004963_030 0.0801542252 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_009467_060 0.089929873 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
9 Hb_000200_030 0.0918954844 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
10 Hb_002024_010 0.0924538529 - - hypothetical protein B456_003G0564002, partial [Gossypium raimondii]
11 Hb_028912_050 0.0931236869 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
12 Hb_172632_080 0.0936410718 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
13 Hb_002374_240 0.0937682342 - - nucellin, putative [Ricinus communis]
14 Hb_000120_920 0.0946376332 - - poly(A) polymerase, putative [Ricinus communis]
15 Hb_006915_070 0.0955589315 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
16 Hb_007441_130 0.0957112025 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_005078_010 0.0975074722 - - Derlin-2, putative [Ricinus communis]
18 Hb_165928_020 0.0975705988 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
19 Hb_012286_010 0.0981172647 - - PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Jatropha curcas]
20 Hb_002271_030 0.0992211801 - - Vacuolar protein sorting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004994_380 Hb_004994_380 Hb_010710_070 Hb_010710_070 Hb_004994_380--Hb_010710_070 Hb_000076_130 Hb_000076_130 Hb_004994_380--Hb_000076_130 Hb_001014_160 Hb_001014_160 Hb_004994_380--Hb_001014_160 Hb_188063_020 Hb_188063_020 Hb_004994_380--Hb_188063_020 Hb_001141_020 Hb_001141_020 Hb_004994_380--Hb_001141_020 Hb_004963_030 Hb_004963_030 Hb_004994_380--Hb_004963_030 Hb_010710_070--Hb_004963_030 Hb_028912_050 Hb_028912_050 Hb_010710_070--Hb_028912_050 Hb_010710_070--Hb_188063_020 Hb_002849_100 Hb_002849_100 Hb_010710_070--Hb_002849_100 Hb_001442_040 Hb_001442_040 Hb_010710_070--Hb_001442_040 Hb_000665_160 Hb_000665_160 Hb_000076_130--Hb_000665_160 Hb_000544_010 Hb_000544_010 Hb_000076_130--Hb_000544_010 Hb_002909_050 Hb_002909_050 Hb_000076_130--Hb_002909_050 Hb_000076_130--Hb_004963_030 Hb_000076_130--Hb_001141_020 Hb_002154_100 Hb_002154_100 Hb_001014_160--Hb_002154_100 Hb_001014_160--Hb_004963_030 Hb_007390_010 Hb_007390_010 Hb_001014_160--Hb_007390_010 Hb_001014_160--Hb_001442_040 Hb_000331_260 Hb_000331_260 Hb_001014_160--Hb_000331_260 Hb_110291_010 Hb_110291_010 Hb_001014_160--Hb_110291_010 Hb_004225_050 Hb_004225_050 Hb_188063_020--Hb_004225_050 Hb_188063_020--Hb_002849_100 Hb_188063_020--Hb_028912_050 Hb_188063_020--Hb_004963_030 Hb_009548_020 Hb_009548_020 Hb_188063_020--Hb_009548_020 Hb_009467_060 Hb_009467_060 Hb_001141_020--Hb_009467_060 Hb_001141_020--Hb_188063_020 Hb_003025_110 Hb_003025_110 Hb_001141_020--Hb_003025_110 Hb_000883_020 Hb_000883_020 Hb_001141_020--Hb_000883_020 Hb_001141_020--Hb_009548_020 Hb_030736_100 Hb_030736_100 Hb_001141_020--Hb_030736_100 Hb_004963_030--Hb_001442_040 Hb_004963_030--Hb_028912_050 Hb_000343_250 Hb_000343_250 Hb_004963_030--Hb_000343_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9664 3.91929 5.77951 6.20132 9.60922 14.6036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.03404 7.06258 8.41511 7.36452 13.4475

CAGE analysis