Hb_005000_080

Information

Type -
Description -
Location Contig5000: 63380-71615
Sequence    

Annotation

kegg
ID rcu:RCOM_1046620
description Thioredoxin, putative
nr
ID XP_011014007.1
description PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
swissprot
ID Q5TKD8
description Thioredoxin-like 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0200100 PE=2 SV=1
trembl
ID B9RK57
description Thioredoxin, putative OS=Ricinus communis GN=RCOM_1046620 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin-like chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45794: 63398-71604
cDNA
(Sanger)
(ID:Location)		 024_F08.ab1: 63420-71142 , 027_N02.ab1: 63400-71142 , 036_H06.ab1: 63400-71142

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_080 0.0 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
2 Hb_003994_080 0.0795163761 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
3 Hb_000208_190 0.0886040918 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
4 Hb_138585_030 0.0909676122 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
5 Hb_000188_060 0.0972643141 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
6 Hb_000235_070 0.0976487818 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
7 Hb_001021_210 0.1029059956 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
8 Hb_000088_260 0.1045791644 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
9 Hb_003883_010 0.1046162727 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
10 Hb_001307_100 0.1060635879 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_002915_010 0.1076945813 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
12 Hb_000680_010 0.1087630304 - - PREDICTED: putative hydrolase C777.06c [Populus euphratica]
13 Hb_010620_050 0.1091500117 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
14 Hb_010344_020 0.1113182209 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
15 Hb_002107_050 0.1142493935 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
16 Hb_001766_070 0.1167369514 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000116_250 0.1182096061 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
18 Hb_004705_160 0.1182181912 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
19 Hb_015967_030 0.1187404177 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 [Jatropha curcas]
20 Hb_000025_540 0.1188047415 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]

Gene co-expression network

sample Hb_005000_080 Hb_005000_080 Hb_003994_080 Hb_003994_080 Hb_005000_080--Hb_003994_080 Hb_000208_190 Hb_000208_190 Hb_005000_080--Hb_000208_190 Hb_138585_030 Hb_138585_030 Hb_005000_080--Hb_138585_030 Hb_000188_060 Hb_000188_060 Hb_005000_080--Hb_000188_060 Hb_000235_070 Hb_000235_070 Hb_005000_080--Hb_000235_070 Hb_001021_210 Hb_001021_210 Hb_005000_080--Hb_001021_210 Hb_003752_090 Hb_003752_090 Hb_003994_080--Hb_003752_090 Hb_003994_080--Hb_001021_210 Hb_003994_080--Hb_138585_030 Hb_000025_540 Hb_000025_540 Hb_003994_080--Hb_000025_540 Hb_010620_050 Hb_010620_050 Hb_003994_080--Hb_010620_050 Hb_004705_160 Hb_004705_160 Hb_000208_190--Hb_004705_160 Hb_022378_010 Hb_022378_010 Hb_000208_190--Hb_022378_010 Hb_000208_190--Hb_138585_030 Hb_000788_030 Hb_000788_030 Hb_000208_190--Hb_000788_030 Hb_010344_020 Hb_010344_020 Hb_000208_190--Hb_010344_020 Hb_138585_030--Hb_004705_160 Hb_138585_030--Hb_010344_020 Hb_000116_250 Hb_000116_250 Hb_138585_030--Hb_000116_250 Hb_000579_040 Hb_000579_040 Hb_138585_030--Hb_000579_040 Hb_138585_030--Hb_010620_050 Hb_068804_090 Hb_068804_090 Hb_138585_030--Hb_068804_090 Hb_000016_200 Hb_000016_200 Hb_000188_060--Hb_000016_200 Hb_000684_390 Hb_000684_390 Hb_000188_060--Hb_000684_390 Hb_000188_060--Hb_003994_080 Hb_000140_060 Hb_000140_060 Hb_000188_060--Hb_000140_060 Hb_000069_360 Hb_000069_360 Hb_000188_060--Hb_000069_360 Hb_001269_620 Hb_001269_620 Hb_000235_070--Hb_001269_620 Hb_061256_010 Hb_061256_010 Hb_000235_070--Hb_061256_010 Hb_027506_040 Hb_027506_040 Hb_000235_070--Hb_027506_040 Hb_015967_030 Hb_015967_030 Hb_000235_070--Hb_015967_030 Hb_000088_260 Hb_000088_260 Hb_000235_070--Hb_000088_260 Hb_001021_210--Hb_010620_050 Hb_001021_210--Hb_003752_090 Hb_002107_050 Hb_002107_050 Hb_001021_210--Hb_002107_050 Hb_007594_080 Hb_007594_080 Hb_001021_210--Hb_007594_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.95911 22.1581 47.2654 31.3629 6.56982 7.14636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.45703 14.4418 17.4991 10.1524 48.7747

CAGE analysis