Hb_005000_140

Information

Type -
Description -
Location Contig5000: 127405-131839
Sequence    

Annotation

kegg
ID rcu:RCOM_1046910
description hypothetical protein
nr
ID XP_012076923.1
description PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07403 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45805: 128337-128739
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_140 0.0 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
2 Hb_156635_020 0.1001395355 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
3 Hb_000012_210 0.1073557103 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
4 Hb_152910_010 0.1108177808 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
5 Hb_004837_220 0.1157361325 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
6 Hb_005649_090 0.1269697057 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
7 Hb_001085_300 0.1344597672 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
8 Hb_005833_030 0.1356102892 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
9 Hb_000692_210 0.136341967 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
10 Hb_002609_190 0.1366017872 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
11 Hb_000803_180 0.1374475929 - - hexokinase [Manihot esculenta]
12 Hb_000421_110 0.1374718683 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
13 Hb_000692_120 0.1397581086 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
14 Hb_004319_050 0.1398037551 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
15 Hb_007031_040 0.1402649125 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
16 Hb_004267_060 0.1432644616 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_001009_090 0.1434244512 - - CDK protein [Hevea brasiliensis]
18 Hb_073171_090 0.1441040667 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
19 Hb_005054_310 0.1452663251 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
20 Hb_004526_010 0.1454634767 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_005000_140 Hb_005000_140 Hb_156635_020 Hb_156635_020 Hb_005000_140--Hb_156635_020 Hb_000012_210 Hb_000012_210 Hb_005000_140--Hb_000012_210 Hb_152910_010 Hb_152910_010 Hb_005000_140--Hb_152910_010 Hb_004837_220 Hb_004837_220 Hb_005000_140--Hb_004837_220 Hb_005649_090 Hb_005649_090 Hb_005000_140--Hb_005649_090 Hb_001085_300 Hb_001085_300 Hb_005000_140--Hb_001085_300 Hb_156635_020--Hb_152910_010 Hb_009449_060 Hb_009449_060 Hb_156635_020--Hb_009449_060 Hb_011915_040 Hb_011915_040 Hb_156635_020--Hb_011915_040 Hb_003018_030 Hb_003018_030 Hb_156635_020--Hb_003018_030 Hb_000958_080 Hb_000958_080 Hb_156635_020--Hb_000958_080 Hb_055488_020 Hb_055488_020 Hb_000012_210--Hb_055488_020 Hb_000012_210--Hb_156635_020 Hb_073171_090 Hb_073171_090 Hb_000012_210--Hb_073171_090 Hb_002311_140 Hb_002311_140 Hb_000012_210--Hb_002311_140 Hb_001259_110 Hb_001259_110 Hb_000012_210--Hb_001259_110 Hb_172257_010 Hb_172257_010 Hb_152910_010--Hb_172257_010 Hb_030545_030 Hb_030545_030 Hb_152910_010--Hb_030545_030 Hb_004319_050 Hb_004319_050 Hb_152910_010--Hb_004319_050 Hb_000302_170 Hb_000302_170 Hb_152910_010--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_152910_010--Hb_000300_550 Hb_000640_190 Hb_000640_190 Hb_152910_010--Hb_000640_190 Hb_163968_010 Hb_163968_010 Hb_004837_220--Hb_163968_010 Hb_010368_080 Hb_010368_080 Hb_004837_220--Hb_010368_080 Hb_004267_060 Hb_004267_060 Hb_004837_220--Hb_004267_060 Hb_004837_220--Hb_001085_300 Hb_000000_340 Hb_000000_340 Hb_004837_220--Hb_000000_340 Hb_004195_120 Hb_004195_120 Hb_005649_090--Hb_004195_120 Hb_000056_300 Hb_000056_300 Hb_005649_090--Hb_000056_300 Hb_001009_090 Hb_001009_090 Hb_005649_090--Hb_001009_090 Hb_002903_140 Hb_002903_140 Hb_005649_090--Hb_002903_140 Hb_003226_110 Hb_003226_110 Hb_005649_090--Hb_003226_110 Hb_005649_090--Hb_030545_030 Hb_056196_060 Hb_056196_060 Hb_001085_300--Hb_056196_060 Hb_000272_110 Hb_000272_110 Hb_001085_300--Hb_000272_110 Hb_008112_010 Hb_008112_010 Hb_001085_300--Hb_008112_010 Hb_001318_150 Hb_001318_150 Hb_001085_300--Hb_001318_150 Hb_001085_300--Hb_003018_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.969286 2.8972 2.76751 1.81297 0.986394 0.602603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.245494 0.354141 0.397736 1.3822 0.341041

CAGE analysis