Hb_005000_160

Information

Type -
Description -
Location Contig5000: 161315-161887
Sequence    

Annotation

kegg
ID vvi:104880632
description uncharacterized LOC104880632
nr
ID XP_012076929.1
description PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07405 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_160 0.0 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
2 Hb_003371_100 0.1001812713 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
3 Hb_001276_060 0.114113058 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
4 Hb_000788_080 0.1171006345 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
5 Hb_009838_040 0.1179754529 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
6 Hb_011671_400 0.1219382631 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
7 Hb_000613_160 0.12326921 - - coated vesicle membrane protein, putative [Ricinus communis]
8 Hb_001507_070 0.1304167184 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012239_100 0.1452714122 - - hypothetical protein VITISV_043897 [Vitis vinifera]
10 Hb_000742_270 0.1456500665 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
11 Hb_003211_050 0.1470804275 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
12 Hb_003095_070 0.1478567253 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
13 Hb_011004_010 0.1481867458 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
14 Hb_000260_580 0.1503563749 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001213_120 0.1529550614 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
16 Hb_001102_250 0.1573101301 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
17 Hb_000215_180 0.1617869385 - - hypothetical protein 17 [Hevea brasiliensis]
18 Hb_078633_010 0.1630063753 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
19 Hb_001268_080 0.1644182013 - - catalytic, putative [Ricinus communis]
20 Hb_000175_610 0.1648464635 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_005000_160 Hb_005000_160 Hb_003371_100 Hb_003371_100 Hb_005000_160--Hb_003371_100 Hb_001276_060 Hb_001276_060 Hb_005000_160--Hb_001276_060 Hb_000788_080 Hb_000788_080 Hb_005000_160--Hb_000788_080 Hb_009838_040 Hb_009838_040 Hb_005000_160--Hb_009838_040 Hb_011671_400 Hb_011671_400 Hb_005000_160--Hb_011671_400 Hb_000613_160 Hb_000613_160 Hb_005000_160--Hb_000613_160 Hb_001507_070 Hb_001507_070 Hb_003371_100--Hb_001507_070 Hb_011004_010 Hb_011004_010 Hb_003371_100--Hb_011004_010 Hb_000260_580 Hb_000260_580 Hb_003371_100--Hb_000260_580 Hb_000742_270 Hb_000742_270 Hb_003371_100--Hb_000742_270 Hb_000175_610 Hb_000175_610 Hb_003371_100--Hb_000175_610 Hb_003095_070 Hb_003095_070 Hb_001276_060--Hb_003095_070 Hb_001276_060--Hb_011671_400 Hb_003211_050 Hb_003211_050 Hb_001276_060--Hb_003211_050 Hb_001276_060--Hb_000788_080 Hb_001276_060--Hb_009838_040 Hb_000788_080--Hb_003095_070 Hb_001511_140 Hb_001511_140 Hb_000788_080--Hb_001511_140 Hb_000788_080--Hb_000613_160 Hb_001159_200 Hb_001159_200 Hb_000788_080--Hb_001159_200 Hb_000788_080--Hb_009838_040 Hb_000215_180 Hb_000215_180 Hb_009838_040--Hb_000215_180 Hb_012239_100 Hb_012239_100 Hb_009838_040--Hb_012239_100 Hb_001258_140 Hb_001258_140 Hb_009838_040--Hb_001258_140 Hb_000106_100 Hb_000106_100 Hb_009838_040--Hb_000106_100 Hb_078633_010 Hb_078633_010 Hb_011671_400--Hb_078633_010 Hb_002260_090 Hb_002260_090 Hb_011671_400--Hb_002260_090 Hb_011671_400--Hb_003095_070 Hb_003052_040 Hb_003052_040 Hb_011671_400--Hb_003052_040 Hb_000613_160--Hb_001507_070 Hb_002704_050 Hb_002704_050 Hb_000613_160--Hb_002704_050 Hb_000613_160--Hb_001276_060 Hb_000979_250 Hb_000979_250 Hb_000613_160--Hb_000979_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.0301 15.0845 5.48115 8.67044 7.11943 14.806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
204.426 198.66 189.925 22.9798 2.12311

CAGE analysis