Hb_005000_180

Information

Type -
Description -
Location Contig5000: 170924-186802
Sequence    

Annotation

kegg
ID rcu:RCOM_1046950
description hypothetical protein
nr
ID KDP33837.1
description hypothetical protein JCGZ_07408 [Jatropha curcas]
swissprot
ID Q8RWW0
description Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1
trembl
ID A0A067KCH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07408 PE=4 SV=1
Gene Ontology
ID GO:0004672
description receptor-like serine threonine-protein kinase ale2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45810: 170957-178626 , PASA_asmbl_45812: 179925-181247 , PASA_asmbl_45814: 183207-183605 , PASA_asmbl_45815: 184082-185142 , PASA_asmbl_45816: 185524-186409
cDNA
(Sanger)
(ID:Location)		 011_P03.ab1: 171136-178623 , 045_K12.ab1: 170961-178623

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_180 0.0 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
2 Hb_062135_020 0.0842488162 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
3 Hb_000163_210 0.093146329 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
4 Hb_000302_290 0.0947197298 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
5 Hb_120823_010 0.0959035372 - - -
6 Hb_000300_390 0.0976197731 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
7 Hb_000239_030 0.0989925221 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
8 Hb_005663_120 0.1004251535 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
9 Hb_000236_150 0.1009318297 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
10 Hb_012539_020 0.1013687789 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
11 Hb_002374_400 0.1030132307 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
12 Hb_000389_080 0.1032061886 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
13 Hb_000635_080 0.1045409055 - - 60S ribosomal protein L17A [Hevea brasiliensis]
14 Hb_000193_120 0.105011222 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
15 Hb_006588_080 0.1051203204 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
16 Hb_003326_020 0.1053058938 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
17 Hb_005391_030 0.1054720032 - - putative cytidine/deoxycytidylate deaminase family protein [Zea mays]
18 Hb_001085_270 0.1088466469 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
19 Hb_001377_380 0.1105450063 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
20 Hb_000061_130 0.1109150516 - - rotamase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005000_180 Hb_005000_180 Hb_062135_020 Hb_062135_020 Hb_005000_180--Hb_062135_020 Hb_000163_210 Hb_000163_210 Hb_005000_180--Hb_000163_210 Hb_000302_290 Hb_000302_290 Hb_005000_180--Hb_000302_290 Hb_120823_010 Hb_120823_010 Hb_005000_180--Hb_120823_010 Hb_000300_390 Hb_000300_390 Hb_005000_180--Hb_000300_390 Hb_000239_030 Hb_000239_030 Hb_005000_180--Hb_000239_030 Hb_002518_290 Hb_002518_290 Hb_062135_020--Hb_002518_290 Hb_000123_160 Hb_000123_160 Hb_062135_020--Hb_000123_160 Hb_000976_250 Hb_000976_250 Hb_062135_020--Hb_000976_250 Hb_000236_150 Hb_000236_150 Hb_062135_020--Hb_000236_150 Hb_062135_020--Hb_000302_290 Hb_000083_090 Hb_000083_090 Hb_000163_210--Hb_000083_090 Hb_000260_200 Hb_000260_200 Hb_000163_210--Hb_000260_200 Hb_012539_020 Hb_012539_020 Hb_000163_210--Hb_012539_020 Hb_000389_080 Hb_000389_080 Hb_000163_210--Hb_000389_080 Hb_000069_140 Hb_000069_140 Hb_000163_210--Hb_000069_140 Hb_001240_020 Hb_001240_020 Hb_000302_290--Hb_001240_020 Hb_000061_130 Hb_000061_130 Hb_000302_290--Hb_000061_130 Hb_147752_010 Hb_147752_010 Hb_000302_290--Hb_147752_010 Hb_000302_290--Hb_002518_290 Hb_120823_010--Hb_000300_390 Hb_006588_080 Hb_006588_080 Hb_120823_010--Hb_006588_080 Hb_120823_010--Hb_000389_080 Hb_002316_120 Hb_002316_120 Hb_120823_010--Hb_002316_120 Hb_120823_010--Hb_012539_020 Hb_000062_390 Hb_000062_390 Hb_120823_010--Hb_000062_390 Hb_000300_390--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000300_390--Hb_000789_110 Hb_005663_120 Hb_005663_120 Hb_000300_390--Hb_005663_120 Hb_000300_390--Hb_012539_020 Hb_032969_030 Hb_032969_030 Hb_000300_390--Hb_032969_030 Hb_000115_230 Hb_000115_230 Hb_000239_030--Hb_000115_230 Hb_001157_010 Hb_001157_010 Hb_000239_030--Hb_001157_010 Hb_003326_020 Hb_003326_020 Hb_000239_030--Hb_003326_020 Hb_000915_120 Hb_000915_120 Hb_000239_030--Hb_000915_120 Hb_000239_030--Hb_000236_150 Hb_002217_450 Hb_002217_450 Hb_000239_030--Hb_002217_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.09689 4.32651 6.30431 11.1999 6.01418 6.18924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.7885 70.5353 35.8665 19.0268 7.11469

CAGE analysis