Hb_005000_190

Information

Type transcription factor
Description TF Family: C3H
Location Contig5000: 193989-202727
Sequence    

Annotation

kegg
ID rcu:RCOM_1046960
description nucleic acid binding protein, putative
nr
ID XP_012076939.1
description PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
swissprot
ID Q84WU9
description Zinc finger CCCH domain-containing protein 64 OS=Arabidopsis thaliana GN=At5g56900 PE=2 SV=1
trembl
ID A0A067KFS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07409 PE=4 SV=1
Gene Ontology
ID GO:0005829
description zinc finger ccch domain-containing protein 64

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45818: 194192-202749 , PASA_asmbl_45819: 199904-200180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_190 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
2 Hb_001158_070 0.0617262267 - - Protein DEK, putative [Ricinus communis]
3 Hb_001981_030 0.0623159507 - - nuclear acid binding protein, putative [Ricinus communis]
4 Hb_002843_120 0.0688888207 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
5 Hb_000603_280 0.0713856356 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
6 Hb_001153_190 0.0732777402 - - PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
7 Hb_032202_140 0.0763916375 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
8 Hb_000172_430 0.0764500325 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011995_010 0.0772746452 - - dc50, putative [Ricinus communis]
10 Hb_002876_230 0.0782953426 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
11 Hb_000185_070 0.078340139 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001408_140 0.0786059192 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
13 Hb_001728_050 0.0788914096 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
14 Hb_000915_180 0.0795937394 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
15 Hb_000077_140 0.0811814515 - - structural constituent of cell wall, putative [Ricinus communis]
16 Hb_002197_020 0.0813140562 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
17 Hb_001195_530 0.0813286719 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000010_400 0.0817123291 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
19 Hb_005918_010 0.081720589 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
20 Hb_000803_070 0.0826705006 - - PREDICTED: protein TRAUCO [Jatropha curcas]

Gene co-expression network

sample Hb_005000_190 Hb_005000_190 Hb_001158_070 Hb_001158_070 Hb_005000_190--Hb_001158_070 Hb_001981_030 Hb_001981_030 Hb_005000_190--Hb_001981_030 Hb_002843_120 Hb_002843_120 Hb_005000_190--Hb_002843_120 Hb_000603_280 Hb_000603_280 Hb_005000_190--Hb_000603_280 Hb_001153_190 Hb_001153_190 Hb_005000_190--Hb_001153_190 Hb_032202_140 Hb_032202_140 Hb_005000_190--Hb_032202_140 Hb_000205_190 Hb_000205_190 Hb_001158_070--Hb_000205_190 Hb_008165_060 Hb_008165_060 Hb_001158_070--Hb_008165_060 Hb_000010_400 Hb_000010_400 Hb_001158_070--Hb_000010_400 Hb_001158_070--Hb_000603_280 Hb_001158_070--Hb_002843_120 Hb_002686_170 Hb_002686_170 Hb_001981_030--Hb_002686_170 Hb_000185_070 Hb_000185_070 Hb_001981_030--Hb_000185_070 Hb_001981_030--Hb_001153_190 Hb_002197_020 Hb_002197_020 Hb_001981_030--Hb_002197_020 Hb_000915_180 Hb_000915_180 Hb_001981_030--Hb_000915_180 Hb_002843_120--Hb_000603_280 Hb_002267_140 Hb_002267_140 Hb_002843_120--Hb_002267_140 Hb_138596_010 Hb_138596_010 Hb_002843_120--Hb_138596_010 Hb_000077_140 Hb_000077_140 Hb_002843_120--Hb_000077_140 Hb_003504_030 Hb_003504_030 Hb_002843_120--Hb_003504_030 Hb_013399_100 Hb_013399_100 Hb_002843_120--Hb_013399_100 Hb_000603_280--Hb_000077_140 Hb_007163_120 Hb_007163_120 Hb_000603_280--Hb_007163_120 Hb_005653_090 Hb_005653_090 Hb_000603_280--Hb_005653_090 Hb_008406_200 Hb_008406_200 Hb_000603_280--Hb_008406_200 Hb_000603_280--Hb_013399_100 Hb_005918_010 Hb_005918_010 Hb_001153_190--Hb_005918_010 Hb_002805_190 Hb_002805_190 Hb_001153_190--Hb_002805_190 Hb_000162_030 Hb_000162_030 Hb_001153_190--Hb_000162_030 Hb_002046_110 Hb_002046_110 Hb_001153_190--Hb_002046_110 Hb_002600_020 Hb_002600_020 Hb_032202_140--Hb_002600_020 Hb_002013_020 Hb_002013_020 Hb_032202_140--Hb_002013_020 Hb_001163_050 Hb_001163_050 Hb_032202_140--Hb_001163_050 Hb_003001_080 Hb_003001_080 Hb_032202_140--Hb_003001_080 Hb_001456_060 Hb_001456_060 Hb_032202_140--Hb_001456_060 Hb_011995_010 Hb_011995_010 Hb_032202_140--Hb_011995_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5793 11.7419 13.5397 7.78673 9.51578 11.3774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.64769 8.1564 13.6429 9.64438 7.57247

CAGE analysis