Hb_005000_230

Information

Type transcription factor
Description TF Family: bHLH
Location Contig5000: 251425-254362
Sequence    

Annotation

kegg
ID rcu:RCOM_1047040
description DNA binding protein, putative
nr
ID XP_012077527.1
description PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
swissprot
ID Q9LTS4
description Putative transcription factor bHLH041 OS=Arabidopsis thaliana GN=BHLH41 PE=3 SV=1
trembl
ID A0A067KNI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07416 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_230 0.0 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
2 Hb_039650_010 0.0707765633 - - cellulose synthase-like protein [Populus tomentosa]
3 Hb_008707_020 0.1177353433 - - ATP binding protein, putative [Ricinus communis]
4 Hb_011924_030 0.1178385352 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000284_060 0.1225197901 desease resistance Gene Name: NB-ARC disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
6 Hb_001403_070 0.1239497668 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
7 Hb_007850_050 0.1264720488 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
8 Hb_067034_010 0.1298338451 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
9 Hb_004940_090 0.1309557011 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
10 Hb_002025_370 0.1312245084 - - monooxygenase, putative [Ricinus communis]
11 Hb_000871_020 0.1322038585 - - receptor-kinase, putative [Ricinus communis]
12 Hb_002648_020 0.1388901449 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Populus euphratica]
13 Hb_002864_040 0.1425696809 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
14 Hb_005648_030 0.14333505 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH18-like [Jatropha curcas]
15 Hb_006124_040 0.1446235469 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
16 Hb_009740_010 0.1463033237 - - receptor-kinase, putative [Ricinus communis]
17 Hb_030312_060 0.1466535545 - - PREDICTED: uncharacterized protein LOC105634226 [Jatropha curcas]
18 Hb_000164_180 0.1481721729 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
19 Hb_005081_060 0.1492879259 - - hypothetical protein EUGRSUZ_C00833 [Eucalyptus grandis]
20 Hb_001850_010 0.1501501982 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]

Gene co-expression network

sample Hb_005000_230 Hb_005000_230 Hb_039650_010 Hb_039650_010 Hb_005000_230--Hb_039650_010 Hb_008707_020 Hb_008707_020 Hb_005000_230--Hb_008707_020 Hb_011924_030 Hb_011924_030 Hb_005000_230--Hb_011924_030 Hb_000284_060 Hb_000284_060 Hb_005000_230--Hb_000284_060 Hb_001403_070 Hb_001403_070 Hb_005000_230--Hb_001403_070 Hb_007850_050 Hb_007850_050 Hb_005000_230--Hb_007850_050 Hb_039650_010--Hb_008707_020 Hb_039650_010--Hb_011924_030 Hb_039650_010--Hb_000284_060 Hb_002025_370 Hb_002025_370 Hb_039650_010--Hb_002025_370 Hb_005081_060 Hb_005081_060 Hb_039650_010--Hb_005081_060 Hb_001376_020 Hb_001376_020 Hb_008707_020--Hb_001376_020 Hb_000035_360 Hb_000035_360 Hb_008707_020--Hb_000035_360 Hb_003847_140 Hb_003847_140 Hb_008707_020--Hb_003847_140 Hb_008707_020--Hb_011924_030 Hb_001486_130 Hb_001486_130 Hb_008707_020--Hb_001486_130 Hb_000871_020 Hb_000871_020 Hb_011924_030--Hb_000871_020 Hb_011924_030--Hb_000035_360 Hb_011924_030--Hb_000284_060 Hb_011924_030--Hb_003847_140 Hb_000796_100 Hb_000796_100 Hb_011924_030--Hb_000796_100 Hb_009740_010 Hb_009740_010 Hb_011924_030--Hb_009740_010 Hb_000284_060--Hb_000035_360 Hb_000284_060--Hb_008707_020 Hb_000284_060--Hb_000871_020 Hb_000233_060 Hb_000233_060 Hb_000284_060--Hb_000233_060 Hb_001749_020 Hb_001749_020 Hb_001403_070--Hb_001749_020 Hb_006124_040 Hb_006124_040 Hb_001403_070--Hb_006124_040 Hb_022630_010 Hb_022630_010 Hb_001403_070--Hb_022630_010 Hb_001403_070--Hb_011924_030 Hb_001403_070--Hb_001486_130 Hb_006452_140 Hb_006452_140 Hb_001403_070--Hb_006452_140 Hb_002864_040 Hb_002864_040 Hb_007850_050--Hb_002864_040 Hb_005648_030 Hb_005648_030 Hb_007850_050--Hb_005648_030 Hb_007850_050--Hb_001403_070 Hb_033153_010 Hb_033153_010 Hb_007850_050--Hb_033153_010 Hb_001405_260 Hb_001405_260 Hb_007850_050--Hb_001405_260 Hb_078477_010 Hb_078477_010 Hb_007850_050--Hb_078477_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.02638 0.10952 0.0500405 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0495324 0 0 0.426742 0.1643

CAGE analysis