Hb_005000_260

Information

Type -
Description -
Location Contig5000: 267812-274920
Sequence    

Annotation

kegg
ID pop:POPTR_0006s15100g
description POPTRDRAFT_717577; recA family protein
nr
ID XP_002308284.1
description recA family protein [Populus trichocarpa]
swissprot
ID Q9ZUP2
description DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At2g19490 PE=2 SV=2
trembl
ID B9HDY6
description RecA family protein OS=Populus trichocarpa GN=POPTR_0006s15100g PE=3 SV=1
Gene Ontology
ID GO:0003697
description dna repair protein reca homolog mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45823: 267733-274911
cDNA
(Sanger)
(ID:Location)		 036_E12.ab1: 272584-274911

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_260 0.0 - - recA family protein [Populus trichocarpa]
2 Hb_006922_010 0.0535881513 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
3 Hb_003370_030 0.0568841481 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
4 Hb_002900_090 0.0624175188 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
5 Hb_000739_100 0.0658842036 - - ku P80 DNA helicase, putative [Ricinus communis]
6 Hb_001408_040 0.0722041611 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
7 Hb_007163_120 0.0738484515 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
8 Hb_001635_090 0.0744399746 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
9 Hb_028962_020 0.0803539317 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
10 Hb_000922_360 0.0807554946 - - -
11 Hb_000679_310 0.0809093863 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
12 Hb_033772_030 0.0825017345 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
13 Hb_000025_410 0.083306736 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
14 Hb_001840_090 0.0841817507 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
15 Hb_003464_090 0.0864285092 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
16 Hb_000173_490 0.0880307825 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
17 Hb_011618_090 0.0880947189 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
18 Hb_024621_040 0.0883458248 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
19 Hb_002111_070 0.0884536464 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
20 Hb_008511_090 0.0885301132 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]

Gene co-expression network

sample Hb_005000_260 Hb_005000_260 Hb_006922_010 Hb_006922_010 Hb_005000_260--Hb_006922_010 Hb_003370_030 Hb_003370_030 Hb_005000_260--Hb_003370_030 Hb_002900_090 Hb_002900_090 Hb_005000_260--Hb_002900_090 Hb_000739_100 Hb_000739_100 Hb_005000_260--Hb_000739_100 Hb_001408_040 Hb_001408_040 Hb_005000_260--Hb_001408_040 Hb_007163_120 Hb_007163_120 Hb_005000_260--Hb_007163_120 Hb_033772_030 Hb_033772_030 Hb_006922_010--Hb_033772_030 Hb_006922_010--Hb_002900_090 Hb_006922_010--Hb_003370_030 Hb_006922_010--Hb_007163_120 Hb_006922_010--Hb_000739_100 Hb_003370_030--Hb_007163_120 Hb_001114_140 Hb_001114_140 Hb_003370_030--Hb_001114_140 Hb_003370_030--Hb_033772_030 Hb_001266_100 Hb_001266_100 Hb_003370_030--Hb_001266_100 Hb_003464_090 Hb_003464_090 Hb_003370_030--Hb_003464_090 Hb_002900_090--Hb_033772_030 Hb_002900_090--Hb_000739_100 Hb_002900_090--Hb_003464_090 Hb_002900_090--Hb_007163_120 Hb_001157_090 Hb_001157_090 Hb_000739_100--Hb_001157_090 Hb_000703_150 Hb_000703_150 Hb_000739_100--Hb_000703_150 Hb_002686_030 Hb_002686_030 Hb_000739_100--Hb_002686_030 Hb_001635_090 Hb_001635_090 Hb_001408_040--Hb_001635_090 Hb_001248_060 Hb_001248_060 Hb_001408_040--Hb_001248_060 Hb_000484_030 Hb_000484_030 Hb_001408_040--Hb_000484_030 Hb_002205_110 Hb_002205_110 Hb_001408_040--Hb_002205_110 Hb_002028_210 Hb_002028_210 Hb_001408_040--Hb_002028_210 Hb_010381_090 Hb_010381_090 Hb_001408_040--Hb_010381_090 Hb_007163_120--Hb_003464_090 Hb_007163_120--Hb_033772_030 Hb_011491_010 Hb_011491_010 Hb_007163_120--Hb_011491_010 Hb_007765_110 Hb_007765_110 Hb_007163_120--Hb_007765_110 Hb_024621_040 Hb_024621_040 Hb_007163_120--Hb_024621_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7623 11.9122 6.52295 8.68264 6.85146 9.38147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.38253 8.50753 8.17614 11.9385 4.658

CAGE analysis