Hb_005000_270

Information

Type -
Description -
Location Contig5000: 276745-281008
Sequence    

Annotation

kegg
ID vvi:100267878
description nucleosome assembly protein 1;4-like
nr
ID CBI27898.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q70Z18
description Nucleosome assembly protein 1;2 OS=Nicotiana tabacum GN=NAP1;2 PE=1 SV=1
trembl
ID D7TB63
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g02050 PE=3 SV=1
Gene Ontology
ID GO:0005634
description nucleosome assembly protein 1 2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45824: 276822-281043 , PASA_asmbl_45826: 277104-277548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_270 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_001582_030 0.0579605146 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
3 Hb_002918_070 0.0640104725 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
4 Hb_000134_360 0.071579679 - - PREDICTED: protein gar2 [Jatropha curcas]
5 Hb_005129_050 0.0748022186 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
6 Hb_000212_280 0.0748829742 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
7 Hb_003716_020 0.0764636564 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
8 Hb_000372_040 0.0787605108 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_007668_020 0.081334644 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
10 Hb_000035_400 0.0863156946 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
11 Hb_000805_310 0.0868197521 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
12 Hb_002475_050 0.0879815901 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
13 Hb_002986_050 0.0886434219 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
14 Hb_000732_020 0.0893105594 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
15 Hb_001486_120 0.0896341186 - - PREDICTED: importin-5-like [Jatropha curcas]
16 Hb_113216_010 0.0905455487 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
17 Hb_003581_020 0.0907405834 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
18 Hb_004881_050 0.0918383153 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
19 Hb_174865_050 0.0930756026 - - PREDICTED: neuroguidin [Jatropha curcas]
20 Hb_011497_010 0.0934230756 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]

Gene co-expression network

sample Hb_005000_270 Hb_005000_270 Hb_001582_030 Hb_001582_030 Hb_005000_270--Hb_001582_030 Hb_002918_070 Hb_002918_070 Hb_005000_270--Hb_002918_070 Hb_000134_360 Hb_000134_360 Hb_005000_270--Hb_000134_360 Hb_005129_050 Hb_005129_050 Hb_005000_270--Hb_005129_050 Hb_000212_280 Hb_000212_280 Hb_005000_270--Hb_000212_280 Hb_003716_020 Hb_003716_020 Hb_005000_270--Hb_003716_020 Hb_001582_030--Hb_000212_280 Hb_001582_030--Hb_000134_360 Hb_019871_020 Hb_019871_020 Hb_001582_030--Hb_019871_020 Hb_008528_010 Hb_008528_010 Hb_001582_030--Hb_008528_010 Hb_000732_020 Hb_000732_020 Hb_001582_030--Hb_000732_020 Hb_000211_090 Hb_000211_090 Hb_002918_070--Hb_000211_090 Hb_002918_070--Hb_000212_280 Hb_001486_120 Hb_001486_120 Hb_002918_070--Hb_001486_120 Hb_000779_040 Hb_000779_040 Hb_002918_070--Hb_000779_040 Hb_002918_070--Hb_000134_360 Hb_000631_150 Hb_000631_150 Hb_000134_360--Hb_000631_150 Hb_000134_360--Hb_001486_120 Hb_000134_360--Hb_008528_010 Hb_000003_790 Hb_000003_790 Hb_000134_360--Hb_000003_790 Hb_000849_100 Hb_000849_100 Hb_000134_360--Hb_000849_100 Hb_001301_210 Hb_001301_210 Hb_005129_050--Hb_001301_210 Hb_001278_060 Hb_001278_060 Hb_005129_050--Hb_001278_060 Hb_002883_010 Hb_002883_010 Hb_005129_050--Hb_002883_010 Hb_001433_190 Hb_001433_190 Hb_005129_050--Hb_001433_190 Hb_007668_020 Hb_007668_020 Hb_005129_050--Hb_007668_020 Hb_001196_070 Hb_001196_070 Hb_005129_050--Hb_001196_070 Hb_025048_040 Hb_025048_040 Hb_000212_280--Hb_025048_040 Hb_113216_010 Hb_113216_010 Hb_000212_280--Hb_113216_010 Hb_002374_150 Hb_002374_150 Hb_000212_280--Hb_002374_150 Hb_000331_480 Hb_000331_480 Hb_000212_280--Hb_000331_480 Hb_005028_010 Hb_005028_010 Hb_000212_280--Hb_005028_010 Hb_011497_010 Hb_011497_010 Hb_003716_020--Hb_011497_010 Hb_003716_020--Hb_007668_020 Hb_003581_020 Hb_003581_020 Hb_003716_020--Hb_003581_020 Hb_003716_020--Hb_000849_100 Hb_006002_030 Hb_006002_030 Hb_003716_020--Hb_006002_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
393.358 130.449 54.6028 83.7481 433.951 633.013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
144.876 85.7693 106.541 100.153 54.7889

CAGE analysis