Hb_005000_290

Information

Type transcription factor
Description TF Family: HSF
Location Contig5000: 291995-294367
Sequence    

Annotation

kegg
ID rcu:RCOM_1047180
description Heat shock factor protein HSF30, putative
nr
ID KDP33859.1
description hypothetical protein JCGZ_07430 [Jatropha curcas]
swissprot
ID O80982
description Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1
trembl
ID A0A067KPW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07430 PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat stress transcription factor a-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45828: 292364-293287 , PASA_asmbl_45829: 292107-293219 , PASA_asmbl_45831: 293598-294185
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_290 0.0 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
2 Hb_015934_020 0.0772733959 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
3 Hb_025087_010 0.0856729214 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
4 Hb_183963_020 0.0887849458 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
5 Hb_007229_060 0.0952712702 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
6 Hb_000329_600 0.0980444784 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
7 Hb_002307_090 0.098361762 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
8 Hb_001191_100 0.0998427812 - - F-actin capping protein beta subunit [Populus trichocarpa]
9 Hb_000032_220 0.1005038745 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
10 Hb_000427_110 0.1031778906 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
11 Hb_000252_040 0.1032527314 - - PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]
12 Hb_009026_050 0.1050713713 - - vacuolar ATPase F subunit [Hevea brasiliensis]
13 Hb_001606_070 0.1051226158 - - fimbrin, putative [Ricinus communis]
14 Hb_001366_230 0.1052871803 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001366_220 0.1055162669 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002387_060 0.107428024 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006787_040 0.1086654938 - - polyadenylate-binding protein, putative [Ricinus communis]
18 Hb_000085_300 0.1094931416 - - -
19 Hb_001396_220 0.1152324956 - - nuclear transport factor, putative [Ricinus communis]
20 Hb_002392_040 0.1161116149 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005000_290 Hb_005000_290 Hb_015934_020 Hb_015934_020 Hb_005000_290--Hb_015934_020 Hb_025087_010 Hb_025087_010 Hb_005000_290--Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_005000_290--Hb_183963_020 Hb_007229_060 Hb_007229_060 Hb_005000_290--Hb_007229_060 Hb_000329_600 Hb_000329_600 Hb_005000_290--Hb_000329_600 Hb_002307_090 Hb_002307_090 Hb_005000_290--Hb_002307_090 Hb_007810_030 Hb_007810_030 Hb_015934_020--Hb_007810_030 Hb_002387_060 Hb_002387_060 Hb_015934_020--Hb_002387_060 Hb_000032_220 Hb_000032_220 Hb_015934_020--Hb_000032_220 Hb_000078_010 Hb_000078_010 Hb_015934_020--Hb_000078_010 Hb_002685_090 Hb_002685_090 Hb_015934_020--Hb_002685_090 Hb_025087_010--Hb_183963_020 Hb_001366_230 Hb_001366_230 Hb_025087_010--Hb_001366_230 Hb_008695_190 Hb_008695_190 Hb_025087_010--Hb_008695_190 Hb_009026_050 Hb_009026_050 Hb_025087_010--Hb_009026_050 Hb_001722_040 Hb_001722_040 Hb_025087_010--Hb_001722_040 Hb_000085_300 Hb_000085_300 Hb_183963_020--Hb_000085_300 Hb_183963_020--Hb_001722_040 Hb_183963_020--Hb_001366_230 Hb_007021_020 Hb_007021_020 Hb_183963_020--Hb_007021_020 Hb_183963_020--Hb_002387_060 Hb_000983_100 Hb_000983_100 Hb_007229_060--Hb_000983_100 Hb_007229_060--Hb_002307_090 Hb_000861_040 Hb_000861_040 Hb_007229_060--Hb_000861_040 Hb_002326_030 Hb_002326_030 Hb_007229_060--Hb_002326_030 Hb_002794_030 Hb_002794_030 Hb_007229_060--Hb_002794_030 Hb_001981_090 Hb_001981_090 Hb_007229_060--Hb_001981_090 Hb_000329_600--Hb_015934_020 Hb_001396_220 Hb_001396_220 Hb_000329_600--Hb_001396_220 Hb_004453_140 Hb_004453_140 Hb_000329_600--Hb_004453_140 Hb_000427_110 Hb_000427_110 Hb_000329_600--Hb_000427_110 Hb_002374_460 Hb_002374_460 Hb_000329_600--Hb_002374_460 Hb_001946_320 Hb_001946_320 Hb_002307_090--Hb_001946_320 Hb_001232_130 Hb_001232_130 Hb_002307_090--Hb_001232_130 Hb_002307_090--Hb_000861_040 Hb_002291_030 Hb_002291_030 Hb_002307_090--Hb_002291_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.1125 3.589 1.28731 3.15654 34.7862 40.3498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.8374 61.7382 61.3234 7.09195 1.73346

CAGE analysis