Hb_005000_310

Information

Type -
Description -
Location Contig5000: 306542-308952
Sequence    

Annotation

kegg
ID rcu:RCOM_1047210
description calmodulin binding protein, putative
nr
ID XP_012076958.1
description PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07427 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45835: 307867-308391
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_310 0.0 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
2 Hb_000019_220 0.1093486933 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
3 Hb_000614_180 0.1287947232 - - -
4 Hb_001366_250 0.1290278399 - - PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Jatropha curcas]
5 Hb_000045_230 0.139607453 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
6 Hb_002311_240 0.1471615502 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
7 Hb_003057_080 0.1580104405 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]
8 Hb_000347_550 0.1593546036 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
9 Hb_002521_010 0.1639804 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
10 Hb_011283_010 0.166264723 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
11 Hb_000200_180 0.1671007446 - - -
12 Hb_000076_200 0.1698186347 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006153_190 0.1737627384 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
14 Hb_004037_010 0.1741442067 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
15 Hb_007527_020 0.1764848033 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
16 Hb_011486_030 0.1775599476 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
17 Hb_080225_010 0.1776000782 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
18 Hb_000161_250 0.1784168246 transcription factor TF Family: Tify conserved hypothetical protein [Ricinus communis]
19 Hb_000471_080 0.1791082335 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
20 Hb_010647_010 0.1819153443 - - PREDICTED: protein NP24-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_005000_310 Hb_005000_310 Hb_000019_220 Hb_000019_220 Hb_005000_310--Hb_000019_220 Hb_000614_180 Hb_000614_180 Hb_005000_310--Hb_000614_180 Hb_001366_250 Hb_001366_250 Hb_005000_310--Hb_001366_250 Hb_000045_230 Hb_000045_230 Hb_005000_310--Hb_000045_230 Hb_002311_240 Hb_002311_240 Hb_005000_310--Hb_002311_240 Hb_003057_080 Hb_003057_080 Hb_005000_310--Hb_003057_080 Hb_000019_220--Hb_000045_230 Hb_000019_220--Hb_002311_240 Hb_000019_220--Hb_003057_080 Hb_010647_010 Hb_010647_010 Hb_000019_220--Hb_010647_010 Hb_002818_080 Hb_002818_080 Hb_000019_220--Hb_002818_080 Hb_002475_070 Hb_002475_070 Hb_000614_180--Hb_002475_070 Hb_148435_010 Hb_148435_010 Hb_000614_180--Hb_148435_010 Hb_000297_180 Hb_000297_180 Hb_000614_180--Hb_000297_180 Hb_002521_010 Hb_002521_010 Hb_000614_180--Hb_002521_010 Hb_000347_530 Hb_000347_530 Hb_000614_180--Hb_000347_530 Hb_029510_110 Hb_029510_110 Hb_001366_250--Hb_029510_110 Hb_004445_090 Hb_004445_090 Hb_001366_250--Hb_004445_090 Hb_007527_020 Hb_007527_020 Hb_001366_250--Hb_007527_020 Hb_000281_200 Hb_000281_200 Hb_001366_250--Hb_000281_200 Hb_000739_130 Hb_000739_130 Hb_001366_250--Hb_000739_130 Hb_000045_230--Hb_003057_080 Hb_004037_010 Hb_004037_010 Hb_000045_230--Hb_004037_010 Hb_011283_010 Hb_011283_010 Hb_000045_230--Hb_011283_010 Hb_001699_240 Hb_001699_240 Hb_000045_230--Hb_001699_240 Hb_001165_040 Hb_001165_040 Hb_000045_230--Hb_001165_040 Hb_002311_240--Hb_010647_010 Hb_001250_140 Hb_001250_140 Hb_002311_240--Hb_001250_140 Hb_002311_240--Hb_003057_080 Hb_000347_550 Hb_000347_550 Hb_002311_240--Hb_000347_550 Hb_003057_080--Hb_000347_550 Hb_080225_010 Hb_080225_010 Hb_003057_080--Hb_080225_010 Hb_003057_080--Hb_011283_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.072037 0.0279559 0.34087 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0825936 0.086643 0 2.71105 0.0455114

CAGE analysis