Hb_005000_320

Information

Type -
Description -
Location Contig5000: 320623-327517
Sequence    

Annotation

kegg
ID pop:POPTR_0018s07090g
description casein kinase family protein
nr
ID XP_012076957.1
description PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
swissprot
ID P42158
description Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2
trembl
ID A0A067KNJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07426 PE=3 SV=1
Gene Ontology
ID GO:0004674
description casein kinase i isoform delta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45836: 320389-327937 , PASA_asmbl_45837: 323616-324315 , PASA_asmbl_45838: 326177-326558 , PASA_asmbl_45839: 325190-325623 , PASA_asmbl_45841: 322716-322999 , PASA_asmbl_45842: 322026-322134
cDNA
(Sanger)
(ID:Location)		 023_G15.ab1: 320413-320709

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_320 0.0 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
2 Hb_000309_040 0.0797363099 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
3 Hb_000933_010 0.081952694 - - -
4 Hb_002235_210 0.0844008043 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
5 Hb_001077_030 0.0879018429 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
6 Hb_001051_080 0.0890003567 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
7 Hb_000011_190 0.0895622037 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Jatropha curcas]
8 Hb_004631_180 0.08961677 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
9 Hb_012322_020 0.0939517451 - - -
10 Hb_000008_220 0.0957842281 transcription factor TF Family: ARF PREDICTED: auxin response factor 10 [Jatropha curcas]
11 Hb_005460_050 0.0959738524 - - COR413-PM2, putative [Ricinus communis]
12 Hb_001635_160 0.0971250746 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
13 Hb_000009_400 0.0989244047 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
14 Hb_002876_320 0.0998670352 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
15 Hb_011310_210 0.100121824 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
16 Hb_001135_130 0.1006258661 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
17 Hb_000982_060 0.1010668568 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
18 Hb_000322_070 0.1025952081 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
19 Hb_000076_160 0.1026176755 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
20 Hb_003096_060 0.1029156763 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_005000_320 Hb_005000_320 Hb_000309_040 Hb_000309_040 Hb_005000_320--Hb_000309_040 Hb_000933_010 Hb_000933_010 Hb_005000_320--Hb_000933_010 Hb_002235_210 Hb_002235_210 Hb_005000_320--Hb_002235_210 Hb_001077_030 Hb_001077_030 Hb_005000_320--Hb_001077_030 Hb_001051_080 Hb_001051_080 Hb_005000_320--Hb_001051_080 Hb_000011_190 Hb_000011_190 Hb_005000_320--Hb_000011_190 Hb_002078_110 Hb_002078_110 Hb_000309_040--Hb_002078_110 Hb_000309_040--Hb_001051_080 Hb_000076_160 Hb_000076_160 Hb_000309_040--Hb_000076_160 Hb_001751_140 Hb_001751_140 Hb_000309_040--Hb_001751_140 Hb_138596_010 Hb_138596_010 Hb_000309_040--Hb_138596_010 Hb_002835_230 Hb_002835_230 Hb_000309_040--Hb_002835_230 Hb_005460_050 Hb_005460_050 Hb_000933_010--Hb_005460_050 Hb_003897_040 Hb_003897_040 Hb_000933_010--Hb_003897_040 Hb_003549_090 Hb_003549_090 Hb_000933_010--Hb_003549_090 Hb_005723_020 Hb_005723_020 Hb_000933_010--Hb_005723_020 Hb_002398_030 Hb_002398_030 Hb_000933_010--Hb_002398_030 Hb_008226_090 Hb_008226_090 Hb_000933_010--Hb_008226_090 Hb_004631_180 Hb_004631_180 Hb_002235_210--Hb_004631_180 Hb_002235_210--Hb_001051_080 Hb_003893_030 Hb_003893_030 Hb_002235_210--Hb_003893_030 Hb_012322_020 Hb_012322_020 Hb_002235_210--Hb_012322_020 Hb_006916_040 Hb_006916_040 Hb_002235_210--Hb_006916_040 Hb_004310_020 Hb_004310_020 Hb_002235_210--Hb_004310_020 Hb_000718_070 Hb_000718_070 Hb_001077_030--Hb_000718_070 Hb_002311_070 Hb_002311_070 Hb_001077_030--Hb_002311_070 Hb_003096_060 Hb_003096_060 Hb_001077_030--Hb_003096_060 Hb_003680_230 Hb_003680_230 Hb_001077_030--Hb_003680_230 Hb_001135_120 Hb_001135_120 Hb_001077_030--Hb_001135_120 Hb_000922_020 Hb_000922_020 Hb_001077_030--Hb_000922_020 Hb_001051_080--Hb_004631_180 Hb_007416_300 Hb_007416_300 Hb_001051_080--Hb_007416_300 Hb_000120_430 Hb_000120_430 Hb_001051_080--Hb_000120_430 Hb_033834_030 Hb_033834_030 Hb_001051_080--Hb_033834_030 Hb_003549_150 Hb_003549_150 Hb_001051_080--Hb_003549_150 Hb_005503_040 Hb_005503_040 Hb_000011_190--Hb_005503_040 Hb_004668_060 Hb_004668_060 Hb_000011_190--Hb_004668_060 Hb_000982_060 Hb_000982_060 Hb_000011_190--Hb_000982_060 Hb_007508_080 Hb_007508_080 Hb_000011_190--Hb_007508_080 Hb_001541_230 Hb_001541_230 Hb_000011_190--Hb_001541_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.0441 53.9805 39.4202 63.3857 45.7951 55.7342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.0296 26.4697 22.9684 22.1902 23.1392

CAGE analysis