Hb_005000_330

Information

Type -
Description -
Location Contig5000: 333111-333455
Sequence    

Annotation

kegg
ID rcu:RCOM_1047530
description hypothetical protein
nr
ID XP_002514131.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RK87
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1047530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_330 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004176_070 0.0911809395 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
3 Hb_000359_150 0.103856185 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
4 Hb_002686_110 0.1063539064 - - -
5 Hb_000167_080 0.1105088249 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
6 Hb_000473_020 0.111255865 - - expressed protein, putative [Ricinus communis]
7 Hb_004784_020 0.1147603119 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
8 Hb_000849_130 0.11877039 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
9 Hb_000768_210 0.1198260482 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
10 Hb_016604_030 0.1222294338 - - histone H4 [Zea mays]
11 Hb_154948_040 0.1235938966 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
12 Hb_026314_020 0.1247609591 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
13 Hb_006452_110 0.1247801537 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
14 Hb_004230_020 0.1248501336 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
15 Hb_005667_040 0.1250433497 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
16 Hb_012796_020 0.1256963807 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
17 Hb_004709_010 0.1269738606 - - hypothetical protein B456_007G097300 [Gossypium raimondii]
18 Hb_006573_020 0.1271051102 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
19 Hb_000808_190 0.1276890186 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
20 Hb_001250_060 0.1278472101 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]

Gene co-expression network

sample Hb_005000_330 Hb_005000_330 Hb_004176_070 Hb_004176_070 Hb_005000_330--Hb_004176_070 Hb_000359_150 Hb_000359_150 Hb_005000_330--Hb_000359_150 Hb_002686_110 Hb_002686_110 Hb_005000_330--Hb_002686_110 Hb_000167_080 Hb_000167_080 Hb_005000_330--Hb_000167_080 Hb_000473_020 Hb_000473_020 Hb_005000_330--Hb_000473_020 Hb_004784_020 Hb_004784_020 Hb_005000_330--Hb_004784_020 Hb_002042_150 Hb_002042_150 Hb_004176_070--Hb_002042_150 Hb_000384_070 Hb_000384_070 Hb_004176_070--Hb_000384_070 Hb_004230_020 Hb_004230_020 Hb_004176_070--Hb_004230_020 Hb_045003_010 Hb_045003_010 Hb_004176_070--Hb_045003_010 Hb_004176_070--Hb_000167_080 Hb_000261_160 Hb_000261_160 Hb_000359_150--Hb_000261_160 Hb_002171_060 Hb_002171_060 Hb_000359_150--Hb_002171_060 Hb_001016_150 Hb_001016_150 Hb_000359_150--Hb_001016_150 Hb_000599_260 Hb_000599_260 Hb_000359_150--Hb_000599_260 Hb_000690_190 Hb_000690_190 Hb_000359_150--Hb_000690_190 Hb_004041_020 Hb_004041_020 Hb_000359_150--Hb_004041_020 Hb_004709_010 Hb_004709_010 Hb_002686_110--Hb_004709_010 Hb_005667_040 Hb_005667_040 Hb_002686_110--Hb_005667_040 Hb_000160_060 Hb_000160_060 Hb_002686_110--Hb_000160_060 Hb_087749_010 Hb_087749_010 Hb_002686_110--Hb_087749_010 Hb_000768_210 Hb_000768_210 Hb_002686_110--Hb_000768_210 Hb_000453_160 Hb_000453_160 Hb_000167_080--Hb_000453_160 Hb_001168_020 Hb_001168_020 Hb_000167_080--Hb_001168_020 Hb_154948_040 Hb_154948_040 Hb_000167_080--Hb_154948_040 Hb_086085_020 Hb_086085_020 Hb_000167_080--Hb_086085_020 Hb_001252_130 Hb_001252_130 Hb_000167_080--Hb_001252_130 Hb_001287_080 Hb_001287_080 Hb_000167_080--Hb_001287_080 Hb_003536_110 Hb_003536_110 Hb_000473_020--Hb_003536_110 Hb_000473_020--Hb_005667_040 Hb_004195_080 Hb_004195_080 Hb_000473_020--Hb_004195_080 Hb_026314_020 Hb_026314_020 Hb_000473_020--Hb_026314_020 Hb_000473_020--Hb_000359_150 Hb_078185_010 Hb_078185_010 Hb_004784_020--Hb_078185_010 Hb_066768_010 Hb_066768_010 Hb_004784_020--Hb_066768_010 Hb_001047_240 Hb_001047_240 Hb_004784_020--Hb_001047_240 Hb_031089_040 Hb_031089_040 Hb_004784_020--Hb_031089_040 Hb_005278_020 Hb_005278_020 Hb_004784_020--Hb_005278_020 Hb_019762_020 Hb_019762_020 Hb_004784_020--Hb_019762_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.735 9.41508 34.6129 69.604 16.0321 39.5372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.5132 59.9921 17.3738 22.2973 16.5267

CAGE analysis