Hb_005015_030

Information

Type -
Description -
Location Contig5015: 17815-21020
Sequence    

Annotation

kegg
ID tcc:TCM_001253
description Defence response isoform 1
nr
ID XP_012075234.1
description PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DIG5
description Defence response isoform 1 OS=Theobroma cacao GN=TCM_001253 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45855: 17829-21006 , PASA_asmbl_45856: 17829-20975 , PASA_asmbl_45857: 17814-21006
cDNA
(Sanger)
(ID:Location)		 028_K17.ab1: 17814-20989 , 036_K13.ab1: 17829-19841 , 038_O18.ab1: 17829-19825 , 042_K04.ab1: 17829-19902

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005015_030 0.0 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
2 Hb_002811_080 0.1076100143 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
3 Hb_006478_160 0.1221631412 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
4 Hb_000975_320 0.1239464543 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
5 Hb_000731_190 0.1306272873 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
6 Hb_002260_010 0.1357091207 - - PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]
7 Hb_001172_120 0.1373113801 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
8 Hb_001235_110 0.1391197656 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
9 Hb_000567_410 0.1401043554 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
10 Hb_000997_190 0.1411654376 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
11 Hb_002006_130 0.1425329946 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
12 Hb_000069_700 0.1442249237 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
13 Hb_180074_010 0.1449736221 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
14 Hb_015807_100 0.145898983 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
15 Hb_000788_010 0.1470580307 - - 40S ribosomal protein S16A [Hevea brasiliensis]
16 Hb_000735_040 0.1471263609 - - 60S ribosomal protein L32A [Hevea brasiliensis]
17 Hb_000035_370 0.1481864207 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000906_040 0.1484382614 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
19 Hb_000115_230 0.1484390276 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
20 Hb_116349_110 0.1487885261 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]

Gene co-expression network

sample Hb_005015_030 Hb_005015_030 Hb_002811_080 Hb_002811_080 Hb_005015_030--Hb_002811_080 Hb_006478_160 Hb_006478_160 Hb_005015_030--Hb_006478_160 Hb_000975_320 Hb_000975_320 Hb_005015_030--Hb_000975_320 Hb_000731_190 Hb_000731_190 Hb_005015_030--Hb_000731_190 Hb_002260_010 Hb_002260_010 Hb_005015_030--Hb_002260_010 Hb_001172_120 Hb_001172_120 Hb_005015_030--Hb_001172_120 Hb_000567_410 Hb_000567_410 Hb_002811_080--Hb_000567_410 Hb_000331_700 Hb_000331_700 Hb_002811_080--Hb_000331_700 Hb_002811_080--Hb_000975_320 Hb_002588_010 Hb_002588_010 Hb_002811_080--Hb_002588_010 Hb_000330_070 Hb_000330_070 Hb_002811_080--Hb_000330_070 Hb_011311_010 Hb_011311_010 Hb_002811_080--Hb_011311_010 Hb_006478_160--Hb_000567_410 Hb_006478_160--Hb_000731_190 Hb_000093_110 Hb_000093_110 Hb_006478_160--Hb_000093_110 Hb_000735_040 Hb_000735_040 Hb_006478_160--Hb_000735_040 Hb_000788_010 Hb_000788_010 Hb_006478_160--Hb_000788_010 Hb_008921_020 Hb_008921_020 Hb_006478_160--Hb_008921_020 Hb_012368_020 Hb_012368_020 Hb_000975_320--Hb_012368_020 Hb_000906_040 Hb_000906_040 Hb_000975_320--Hb_000906_040 Hb_005511_160 Hb_005511_160 Hb_000975_320--Hb_005511_160 Hb_011628_040 Hb_011628_040 Hb_000975_320--Hb_011628_040 Hb_004223_040 Hb_004223_040 Hb_000975_320--Hb_004223_040 Hb_000417_360 Hb_000417_360 Hb_000731_190--Hb_000417_360 Hb_000571_020 Hb_000571_020 Hb_000731_190--Hb_000571_020 Hb_091433_020 Hb_091433_020 Hb_000731_190--Hb_091433_020 Hb_001979_040 Hb_001979_040 Hb_000731_190--Hb_001979_040 Hb_000035_370 Hb_000035_370 Hb_000731_190--Hb_000035_370 Hb_024074_010 Hb_024074_010 Hb_002260_010--Hb_024074_010 Hb_006256_030 Hb_006256_030 Hb_002260_010--Hb_006256_030 Hb_001252_220 Hb_001252_220 Hb_002260_010--Hb_001252_220 Hb_003020_150 Hb_003020_150 Hb_002260_010--Hb_003020_150 Hb_002260_010--Hb_000731_190 Hb_001493_050 Hb_001493_050 Hb_002260_010--Hb_001493_050 Hb_000069_700 Hb_000069_700 Hb_001172_120--Hb_000069_700 Hb_007192_100 Hb_007192_100 Hb_001172_120--Hb_007192_100 Hb_007037_020 Hb_007037_020 Hb_001172_120--Hb_007037_020 Hb_000115_230 Hb_000115_230 Hb_001172_120--Hb_000115_230 Hb_001235_110 Hb_001235_110 Hb_001172_120--Hb_001235_110 Hb_011021_040 Hb_011021_040 Hb_001172_120--Hb_011021_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.50366 20.6083 30.2337 11.1864 9.43209 15.3433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.3693 94.3871 36.8041 17.1477 7.98225

CAGE analysis