Hb_005015_070

Information

Type -
Description -
Location Contig5015: 45005-47434
Sequence    

Annotation

kegg
ID tcc:TCM_001248
description Tetratricopeptide repeat (TPR)-like superfamily protein, putative
nr
ID XP_012075232.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
swissprot
ID Q9SVA5
description Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=3 SV=1
trembl
ID A0A061DQR4
description Tetratricopeptide repeat (TPR)-like superfamily protein, putative OS=Theobroma cacao GN=TCM_001248 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein at4g39530

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005015_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
2 Hb_000696_150 0.082195091 - - PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Jatropha curcas]
3 Hb_004374_070 0.087226879 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
4 Hb_010172_090 0.0908287222 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_001141_390 0.09376413 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
6 Hb_000866_220 0.0955990736 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
7 Hb_048219_010 0.0961388322 - - coronatine-insensitive 1 [Hevea brasiliensis]
8 Hb_001818_070 0.0969961349 - - carbon catabolite repressor protein, putative [Ricinus communis]
9 Hb_004767_050 0.0977862668 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
10 Hb_004128_060 0.1000644497 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
11 Hb_000213_100 0.1002036372 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
12 Hb_003376_350 0.1003261958 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
13 Hb_001157_040 0.1008257994 - - casein kinase, putative [Ricinus communis]
14 Hb_012807_050 0.1026237076 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
15 Hb_027506_020 0.10318593 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
16 Hb_004907_110 0.1034706517 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
17 Hb_002374_310 0.1041212521 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
18 Hb_000928_300 0.104339085 - - PREDICTED: pentatricopeptide repeat-containing protein At3g03580 [Jatropha curcas]
19 Hb_002813_050 0.1043856073 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
20 Hb_001838_060 0.1045073358 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_005015_070 Hb_005015_070 Hb_000696_150 Hb_000696_150 Hb_005015_070--Hb_000696_150 Hb_004374_070 Hb_004374_070 Hb_005015_070--Hb_004374_070 Hb_010172_090 Hb_010172_090 Hb_005015_070--Hb_010172_090 Hb_001141_390 Hb_001141_390 Hb_005015_070--Hb_001141_390 Hb_000866_220 Hb_000866_220 Hb_005015_070--Hb_000866_220 Hb_048219_010 Hb_048219_010 Hb_005015_070--Hb_048219_010 Hb_000679_090 Hb_000679_090 Hb_000696_150--Hb_000679_090 Hb_000696_150--Hb_000866_220 Hb_004586_340 Hb_004586_340 Hb_000696_150--Hb_004586_340 Hb_000056_210 Hb_000056_210 Hb_000696_150--Hb_000056_210 Hb_001157_040 Hb_001157_040 Hb_000696_150--Hb_001157_040 Hb_000056_240 Hb_000056_240 Hb_004374_070--Hb_000056_240 Hb_000041_100 Hb_000041_100 Hb_004374_070--Hb_000041_100 Hb_003371_090 Hb_003371_090 Hb_004374_070--Hb_003371_090 Hb_004374_070--Hb_000866_220 Hb_007483_100 Hb_007483_100 Hb_004374_070--Hb_007483_100 Hb_002725_120 Hb_002725_120 Hb_004374_070--Hb_002725_120 Hb_000229_020 Hb_000229_020 Hb_010172_090--Hb_000229_020 Hb_006316_040 Hb_006316_040 Hb_010172_090--Hb_006316_040 Hb_008500_010 Hb_008500_010 Hb_010172_090--Hb_008500_010 Hb_012807_050 Hb_012807_050 Hb_010172_090--Hb_012807_050 Hb_001584_150 Hb_001584_150 Hb_010172_090--Hb_001584_150 Hb_004767_050 Hb_004767_050 Hb_010172_090--Hb_004767_050 Hb_000204_210 Hb_000204_210 Hb_001141_390--Hb_000204_210 Hb_000680_050 Hb_000680_050 Hb_001141_390--Hb_000680_050 Hb_002374_310 Hb_002374_310 Hb_001141_390--Hb_002374_310 Hb_001141_390--Hb_048219_010 Hb_001141_390--Hb_001584_150 Hb_000866_220--Hb_001157_040 Hb_000866_220--Hb_000056_240 Hb_008725_260 Hb_008725_260 Hb_000866_220--Hb_008725_260 Hb_010128_080 Hb_010128_080 Hb_000866_220--Hb_010128_080 Hb_002046_180 Hb_002046_180 Hb_000866_220--Hb_002046_180 Hb_000189_560 Hb_000189_560 Hb_000866_220--Hb_000189_560 Hb_012564_030 Hb_012564_030 Hb_048219_010--Hb_012564_030 Hb_048219_010--Hb_004767_050 Hb_001818_070 Hb_001818_070 Hb_048219_010--Hb_001818_070 Hb_001856_230 Hb_001856_230 Hb_048219_010--Hb_001856_230 Hb_003544_110 Hb_003544_110 Hb_048219_010--Hb_003544_110 Hb_011491_010 Hb_011491_010 Hb_048219_010--Hb_011491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.945488 1.95046 0.499528 0.488895 1.07297 1.26087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.892893 1.63462 1.91231 0.797324 0.578716

CAGE analysis