Hb_005016_020

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig5016: 21947-29015
Sequence    

Annotation

kegg
ID rcu:RCOM_1354650
description multidrug resistance protein 1, 2, putative (EC:3.6.3.30 3.6.3.44)
nr
ID AIU41628.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9ZR72
description ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1
trembl
ID A0A097P9Q2
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCB1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter b family member 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45873: 22100-28722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_020 0.0 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
2 Hb_000000_110 0.0863688773 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
3 Hb_001898_020 0.1142963788 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
4 Hb_001178_080 0.1192635118 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
5 Hb_160405_010 0.1223146106 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
6 Hb_012727_010 0.132554393 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
7 Hb_000220_080 0.133445379 - - kinase, putative [Ricinus communis]
8 Hb_001832_210 0.1343790315 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
9 Hb_009745_010 0.1385835343 - - cellulose synthase-like protein [Populus tomentosa]
10 Hb_000025_400 0.141313151 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
11 Hb_000363_180 0.1488483353 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
12 Hb_001009_150 0.1493272831 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
13 Hb_002685_030 0.1510056142 - - PREDICTED: protein SMG7L [Jatropha curcas]
14 Hb_001195_420 0.1523656223 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
15 Hb_001446_060 0.1534580207 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_002289_150 0.1549254709 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
17 Hb_003470_050 0.1553343036 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_003647_040 0.1559417376 - - conserved hypothetical protein [Ricinus communis]
19 Hb_052117_010 0.1562144969 - - kinase, putative [Ricinus communis]
20 Hb_028077_020 0.156324478 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005016_020 Hb_005016_020 Hb_000000_110 Hb_000000_110 Hb_005016_020--Hb_000000_110 Hb_001898_020 Hb_001898_020 Hb_005016_020--Hb_001898_020 Hb_001178_080 Hb_001178_080 Hb_005016_020--Hb_001178_080 Hb_160405_010 Hb_160405_010 Hb_005016_020--Hb_160405_010 Hb_012727_010 Hb_012727_010 Hb_005016_020--Hb_012727_010 Hb_000220_080 Hb_000220_080 Hb_005016_020--Hb_000220_080 Hb_001832_210 Hb_001832_210 Hb_000000_110--Hb_001832_210 Hb_000000_110--Hb_000220_080 Hb_000000_110--Hb_001178_080 Hb_000000_120 Hb_000000_120 Hb_000000_110--Hb_000000_120 Hb_002685_030 Hb_002685_030 Hb_000000_110--Hb_002685_030 Hb_052117_010 Hb_052117_010 Hb_001898_020--Hb_052117_010 Hb_001522_040 Hb_001522_040 Hb_001898_020--Hb_001522_040 Hb_001446_060 Hb_001446_060 Hb_001898_020--Hb_001446_060 Hb_009745_010 Hb_009745_010 Hb_001898_020--Hb_009745_010 Hb_000950_040 Hb_000950_040 Hb_001898_020--Hb_000950_040 Hb_001178_080--Hb_012727_010 Hb_001596_020 Hb_001596_020 Hb_001178_080--Hb_001596_020 Hb_006949_060 Hb_006949_060 Hb_001178_080--Hb_006949_060 Hb_017159_010 Hb_017159_010 Hb_001178_080--Hb_017159_010 Hb_004449_090 Hb_004449_090 Hb_160405_010--Hb_004449_090 Hb_000032_430 Hb_000032_430 Hb_160405_010--Hb_000032_430 Hb_160405_010--Hb_000000_110 Hb_001357_030 Hb_001357_030 Hb_160405_010--Hb_001357_030 Hb_160405_010--Hb_001178_080 Hb_002324_040 Hb_002324_040 Hb_012727_010--Hb_002324_040 Hb_003025_150 Hb_003025_150 Hb_012727_010--Hb_003025_150 Hb_003647_040 Hb_003647_040 Hb_012727_010--Hb_003647_040 Hb_012727_010--Hb_001832_210 Hb_003579_040 Hb_003579_040 Hb_012727_010--Hb_003579_040 Hb_000220_080--Hb_000000_120 Hb_002316_170 Hb_002316_170 Hb_000220_080--Hb_002316_170 Hb_000072_020 Hb_000072_020 Hb_000220_080--Hb_000072_020 Hb_001009_150 Hb_001009_150 Hb_000220_080--Hb_001009_150 Hb_000220_080--Hb_006949_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.90353 25.4614 11.8652 42.4287 3.24139 5.09797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.99536 0.925155 3.99149 17.7741 10.9407

CAGE analysis