Hb_005016_030

Information

Type -
Description -
Location Contig5016: 32376-33822
Sequence    

Annotation

kegg
ID pop:POPTR_0006s12610g
description zinc finger family protein
nr
ID KDP29160.1
description hypothetical protein JCGZ_16549 [Jatropha curcas]
swissprot
ID B0BLT0
description Zinc finger protein 593 OS=Xenopus tropicalis GN=znf593 PE=2 SV=1
trembl
ID A0A067KA49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein 593

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45874: 32412-34135
cDNA
(Sanger)
(ID:Location)		 007_E10.ab1: 32413-34135 , 014_L17.ab1: 32412-34137 , 027_G05.ab1: 32452-34134 , 032_N06.ab1: 32413-34135 , 041_E09.ab1: 32436-34136

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_030 0.0 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
2 Hb_001178_060 0.0428083511 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
3 Hb_000322_170 0.0721201905 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
4 Hb_002149_040 0.0745276601 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006173_020 0.0758710223 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
6 Hb_000320_440 0.084454635 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
7 Hb_001016_060 0.0854920255 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000270_450 0.086766764 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
9 Hb_000172_530 0.0912775402 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
10 Hb_000926_270 0.0921886007 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
11 Hb_000088_180 0.0943041055 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
12 Hb_001776_080 0.0969367014 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
13 Hb_000076_290 0.0970110318 - - translation factor sui1, putative [Ricinus communis]
14 Hb_160818_010 0.097583197 - - -
15 Hb_001523_010 0.0983528432 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
16 Hb_007809_060 0.1010313286 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
17 Hb_060437_010 0.1011085757 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
18 Hb_004032_350 0.1013576114 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
19 Hb_001034_020 0.1018926302 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
20 Hb_006740_020 0.1040901225 - - PREDICTED: bis(5'-adenosyl)-triphosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_005016_030 Hb_005016_030 Hb_001178_060 Hb_001178_060 Hb_005016_030--Hb_001178_060 Hb_000322_170 Hb_000322_170 Hb_005016_030--Hb_000322_170 Hb_002149_040 Hb_002149_040 Hb_005016_030--Hb_002149_040 Hb_006173_020 Hb_006173_020 Hb_005016_030--Hb_006173_020 Hb_000320_440 Hb_000320_440 Hb_005016_030--Hb_000320_440 Hb_001016_060 Hb_001016_060 Hb_005016_030--Hb_001016_060 Hb_001178_060--Hb_000322_170 Hb_000640_210 Hb_000640_210 Hb_001178_060--Hb_000640_210 Hb_060437_010 Hb_060437_010 Hb_001178_060--Hb_060437_010 Hb_000076_290 Hb_000076_290 Hb_001178_060--Hb_000076_290 Hb_001178_060--Hb_002149_040 Hb_000322_170--Hb_000640_210 Hb_004032_350 Hb_004032_350 Hb_000322_170--Hb_004032_350 Hb_000322_170--Hb_000076_290 Hb_000174_200 Hb_000174_200 Hb_000322_170--Hb_000174_200 Hb_002405_020 Hb_002405_020 Hb_002149_040--Hb_002405_020 Hb_001776_080 Hb_001776_080 Hb_002149_040--Hb_001776_080 Hb_002149_040--Hb_001016_060 Hb_000926_270 Hb_000926_270 Hb_002149_040--Hb_000926_270 Hb_002149_040--Hb_006173_020 Hb_006173_020--Hb_001016_060 Hb_009615_110 Hb_009615_110 Hb_006173_020--Hb_009615_110 Hb_019871_020 Hb_019871_020 Hb_006173_020--Hb_019871_020 Hb_006173_020--Hb_000320_440 Hb_000270_450 Hb_000270_450 Hb_006173_020--Hb_000270_450 Hb_000320_440--Hb_001776_080 Hb_000088_180 Hb_000088_180 Hb_000320_440--Hb_000088_180 Hb_000172_530 Hb_000172_530 Hb_000320_440--Hb_000172_530 Hb_000260_700 Hb_000260_700 Hb_000320_440--Hb_000260_700 Hb_000320_440--Hb_009615_110 Hb_003777_220 Hb_003777_220 Hb_000320_440--Hb_003777_220 Hb_003605_070 Hb_003605_070 Hb_001016_060--Hb_003605_070 Hb_000692_260 Hb_000692_260 Hb_001016_060--Hb_000692_260 Hb_000363_340 Hb_000363_340 Hb_001016_060--Hb_000363_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2378.72 787.132 78.0344 119.132 2139.15 2266.64
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
870.626 753.058 600.197 236.675 64.5042

CAGE analysis