Hb_005016_040

Information

Type transcription factor
Description TF Family: E2F-DP
Location Contig5016: 37072-43743
Sequence    

Annotation

kegg
ID vvi:100267128
description transcription factor-like protein DPB
nr
ID XP_012082421.1
description PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
swissprot
ID Q9FNY2
description Transcription factor-like protein DPB OS=Arabidopsis thaliana GN=DPB PE=1 SV=1
trembl
ID A0A067JYW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16550 PE=3 SV=1
Gene Ontology
ID GO:0005667
description transcription factor-like protein dpb

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45876: 37212-43764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_040 0.0 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
2 Hb_008421_020 0.0728387758 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
3 Hb_013405_020 0.0728392801 - - -
4 Hb_000140_090 0.0789670186 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
5 Hb_000811_070 0.081369252 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
6 Hb_005167_010 0.0823084036 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
7 Hb_000080_130 0.0826982386 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
8 Hb_002157_120 0.0827372432 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007975_060 0.0829085281 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
10 Hb_006740_030 0.0832114761 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
11 Hb_007192_030 0.083877852 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
12 Hb_004965_110 0.0887028071 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
13 Hb_000069_640 0.0926948476 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
14 Hb_001662_130 0.0952743725 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
15 Hb_006132_090 0.0955670554 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
16 Hb_001226_140 0.0960728969 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
17 Hb_015675_040 0.0962617764 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
18 Hb_007904_230 0.0990691571 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
19 Hb_000928_070 0.0997874391 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
20 Hb_001195_060 0.0998692614 - - Protein yrdA, putative [Ricinus communis]

Gene co-expression network

sample Hb_005016_040 Hb_005016_040 Hb_008421_020 Hb_008421_020 Hb_005016_040--Hb_008421_020 Hb_013405_020 Hb_013405_020 Hb_005016_040--Hb_013405_020 Hb_000140_090 Hb_000140_090 Hb_005016_040--Hb_000140_090 Hb_000811_070 Hb_000811_070 Hb_005016_040--Hb_000811_070 Hb_005167_010 Hb_005167_010 Hb_005016_040--Hb_005167_010 Hb_000080_130 Hb_000080_130 Hb_005016_040--Hb_000080_130 Hb_008421_020--Hb_000811_070 Hb_008421_020--Hb_013405_020 Hb_001541_120 Hb_001541_120 Hb_008421_020--Hb_001541_120 Hb_003153_010 Hb_003153_010 Hb_008421_020--Hb_003153_010 Hb_004108_160 Hb_004108_160 Hb_008421_020--Hb_004108_160 Hb_007975_060 Hb_007975_060 Hb_013405_020--Hb_007975_060 Hb_002157_120 Hb_002157_120 Hb_013405_020--Hb_002157_120 Hb_006132_090 Hb_006132_090 Hb_013405_020--Hb_006132_090 Hb_004754_050 Hb_004754_050 Hb_013405_020--Hb_004754_050 Hb_006740_030 Hb_006740_030 Hb_000140_090--Hb_006740_030 Hb_000928_070 Hb_000928_070 Hb_000140_090--Hb_000928_070 Hb_000140_090--Hb_001541_120 Hb_007533_040 Hb_007533_040 Hb_000140_090--Hb_007533_040 Hb_010578_080 Hb_010578_080 Hb_000140_090--Hb_010578_080 Hb_006846_150 Hb_006846_150 Hb_000811_070--Hb_006846_150 Hb_000487_260 Hb_000487_260 Hb_000811_070--Hb_000487_260 Hb_007904_230 Hb_007904_230 Hb_000811_070--Hb_007904_230 Hb_000811_070--Hb_006740_030 Hb_000811_070--Hb_005167_010 Hb_001195_060 Hb_001195_060 Hb_005167_010--Hb_001195_060 Hb_012799_170 Hb_012799_170 Hb_005167_010--Hb_012799_170 Hb_005167_010--Hb_006132_090 Hb_005167_010--Hb_000080_130 Hb_004545_110 Hb_004545_110 Hb_005167_010--Hb_004545_110 Hb_005167_010--Hb_007975_060 Hb_000080_130--Hb_004545_110 Hb_015675_040 Hb_015675_040 Hb_000080_130--Hb_015675_040 Hb_001269_130 Hb_001269_130 Hb_000080_130--Hb_001269_130 Hb_133702_010 Hb_133702_010 Hb_000080_130--Hb_133702_010 Hb_000663_060 Hb_000663_060 Hb_000080_130--Hb_000663_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.87566 2.83515 5.22712 6.23488 2.2855 2.85312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.13448 5.87375 4.64681 2.18121 6.21077

CAGE analysis