Hb_005016_050

Information

Type -
Description -
Location Contig5016: 45920-46553
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_050 0.0 - - -
2 Hb_009117_030 0.0819886426 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
3 Hb_023732_090 0.0939341855 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_027472_150 0.0948265618 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
5 Hb_003912_090 0.0985877818 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
6 Hb_003333_060 0.1009169668 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
7 Hb_000193_270 0.1049997797 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
8 Hb_004970_110 0.1058062846 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
9 Hb_002027_070 0.1068781989 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
10 Hb_007317_180 0.1097865234 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
11 Hb_012490_030 0.1108572427 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
12 Hb_008406_190 0.1136237503 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
13 Hb_028420_020 0.1142762328 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
14 Hb_003673_060 0.1152227099 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
15 Hb_000486_010 0.1159385934 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
16 Hb_000086_380 0.1171712273 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
17 Hb_000038_080 0.1177077406 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
18 Hb_000927_020 0.1187031683 - - synaptosomal associated protein, putative [Ricinus communis]
19 Hb_010423_040 0.120755756 - - hypothetical protein JCGZ_17463 [Jatropha curcas]
20 Hb_000889_020 0.1215504294 - - ribosome biogenesis protein brix, putative [Ricinus communis]

Gene co-expression network

sample Hb_005016_050 Hb_005016_050 Hb_009117_030 Hb_009117_030 Hb_005016_050--Hb_009117_030 Hb_023732_090 Hb_023732_090 Hb_005016_050--Hb_023732_090 Hb_027472_150 Hb_027472_150 Hb_005016_050--Hb_027472_150 Hb_003912_090 Hb_003912_090 Hb_005016_050--Hb_003912_090 Hb_003333_060 Hb_003333_060 Hb_005016_050--Hb_003333_060 Hb_000193_270 Hb_000193_270 Hb_005016_050--Hb_000193_270 Hb_001266_080 Hb_001266_080 Hb_009117_030--Hb_001266_080 Hb_000889_020 Hb_000889_020 Hb_009117_030--Hb_000889_020 Hb_009117_030--Hb_003333_060 Hb_032458_010 Hb_032458_010 Hb_009117_030--Hb_032458_010 Hb_000166_110 Hb_000166_110 Hb_009117_030--Hb_000166_110 Hb_000748_080 Hb_000748_080 Hb_023732_090--Hb_000748_080 Hb_005389_150 Hb_005389_150 Hb_023732_090--Hb_005389_150 Hb_010423_040 Hb_010423_040 Hb_023732_090--Hb_010423_040 Hb_012799_130 Hb_012799_130 Hb_023732_090--Hb_012799_130 Hb_012490_030 Hb_012490_030 Hb_023732_090--Hb_012490_030 Hb_004970_110 Hb_004970_110 Hb_027472_150--Hb_004970_110 Hb_000058_100 Hb_000058_100 Hb_027472_150--Hb_000058_100 Hb_002728_070 Hb_002728_070 Hb_027472_150--Hb_002728_070 Hb_001579_220 Hb_001579_220 Hb_027472_150--Hb_001579_220 Hb_002473_130 Hb_002473_130 Hb_027472_150--Hb_002473_130 Hb_000086_380 Hb_000086_380 Hb_027472_150--Hb_000086_380 Hb_005862_010 Hb_005862_010 Hb_003912_090--Hb_005862_010 Hb_028420_020 Hb_028420_020 Hb_003912_090--Hb_028420_020 Hb_144598_030 Hb_144598_030 Hb_003912_090--Hb_144598_030 Hb_020665_040 Hb_020665_040 Hb_003912_090--Hb_020665_040 Hb_002374_020 Hb_002374_020 Hb_003912_090--Hb_002374_020 Hb_008406_190 Hb_008406_190 Hb_003333_060--Hb_008406_190 Hb_000103_080 Hb_000103_080 Hb_003333_060--Hb_000103_080 Hb_003333_060--Hb_010423_040 Hb_000373_280 Hb_000373_280 Hb_003333_060--Hb_000373_280 Hb_063090_010 Hb_063090_010 Hb_003333_060--Hb_063090_010 Hb_000486_010 Hb_000486_010 Hb_003333_060--Hb_000486_010 Hb_000599_300 Hb_000599_300 Hb_000193_270--Hb_000599_300 Hb_153533_010 Hb_153533_010 Hb_000193_270--Hb_153533_010 Hb_005078_010 Hb_005078_010 Hb_000193_270--Hb_005078_010 Hb_000193_270--Hb_009117_030 Hb_003633_030 Hb_003633_030 Hb_000193_270--Hb_003633_030 Hb_011021_020 Hb_011021_020 Hb_000193_270--Hb_011021_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.34484 1.25338 1.02361 2.1079 3.03157 6.46986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.12015 3.38421 1.84673 3.59699 2.55163

CAGE analysis