Hb_005016_060

Information

Type -
Description -
Location Contig5016: 59783-65551
Sequence    

Annotation

kegg
ID rcu:RCOM_1354890
description histidyl-tRNA synthetase, putative (EC:6.1.1.21)
nr
ID XP_012082424.1
description PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
swissprot
ID Q9HLX5
description Histidine--tRNA ligase OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=hisS PE=1 SV=1
trembl
ID A0A067JZ42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16551 PE=3 SV=1
Gene Ontology
ID GO:0005737
description histidine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45880: 63806-65035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_060 0.0 - - PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
2 Hb_001178_150 0.0855376531 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
3 Hb_003299_070 0.0870250199 - - AMP deaminase [Theobroma cacao]
4 Hb_005892_030 0.0874025725 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
5 Hb_000796_190 0.0890983322 - - hypothetical protein F383_31148 [Gossypium arboreum]
6 Hb_010695_020 0.0924878579 - - PREDICTED: superkiller viralicidic activity 2-like 2 [Jatropha curcas]
7 Hb_000594_020 0.0956428841 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
8 Hb_002235_160 0.0976558593 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
9 Hb_000120_620 0.0979087697 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
10 Hb_010931_040 0.0979677165 - - PREDICTED: nijmegen breakage syndrome 1 protein [Jatropha curcas]
11 Hb_000487_220 0.0985755137 - - eukaryotic translation elongation factor, putative [Ricinus communis]
12 Hb_004037_030 0.098658766 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
13 Hb_000935_090 0.1010673531 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
14 Hb_001417_050 0.1013536042 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
15 Hb_000475_020 0.1025895159 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
16 Hb_001493_040 0.1032518258 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
17 Hb_002960_160 0.1038719433 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
18 Hb_147737_010 0.1041145793 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
19 Hb_000329_130 0.104138249 - - beta-tubulin cofactor d, putative [Ricinus communis]
20 Hb_000300_360 0.1045839425 - - PREDICTED: exosome component 10 [Jatropha curcas]

Gene co-expression network

sample Hb_005016_060 Hb_005016_060 Hb_001178_150 Hb_001178_150 Hb_005016_060--Hb_001178_150 Hb_003299_070 Hb_003299_070 Hb_005016_060--Hb_003299_070 Hb_005892_030 Hb_005892_030 Hb_005016_060--Hb_005892_030 Hb_000796_190 Hb_000796_190 Hb_005016_060--Hb_000796_190 Hb_010695_020 Hb_010695_020 Hb_005016_060--Hb_010695_020 Hb_000594_020 Hb_000594_020 Hb_005016_060--Hb_000594_020 Hb_000935_090 Hb_000935_090 Hb_001178_150--Hb_000935_090 Hb_000347_570 Hb_000347_570 Hb_001178_150--Hb_000347_570 Hb_001178_150--Hb_000796_190 Hb_001473_090 Hb_001473_090 Hb_001178_150--Hb_001473_090 Hb_009151_020 Hb_009151_020 Hb_001178_150--Hb_009151_020 Hb_000120_620 Hb_000120_620 Hb_001178_150--Hb_000120_620 Hb_003935_030 Hb_003935_030 Hb_003299_070--Hb_003935_030 Hb_001454_320 Hb_001454_320 Hb_003299_070--Hb_001454_320 Hb_185679_010 Hb_185679_010 Hb_003299_070--Hb_185679_010 Hb_000109_100 Hb_000109_100 Hb_003299_070--Hb_000109_100 Hb_002163_010 Hb_002163_010 Hb_003299_070--Hb_002163_010 Hb_003299_070--Hb_010695_020 Hb_000714_050 Hb_000714_050 Hb_005892_030--Hb_000714_050 Hb_000329_130 Hb_000329_130 Hb_005892_030--Hb_000329_130 Hb_007558_120 Hb_007558_120 Hb_005892_030--Hb_007558_120 Hb_000059_140 Hb_000059_140 Hb_005892_030--Hb_000059_140 Hb_010381_060 Hb_010381_060 Hb_005892_030--Hb_010381_060 Hb_002749_110 Hb_002749_110 Hb_005892_030--Hb_002749_110 Hb_000796_190--Hb_007558_120 Hb_003124_130 Hb_003124_130 Hb_000796_190--Hb_003124_130 Hb_000796_190--Hb_000329_130 Hb_002174_020 Hb_002174_020 Hb_000796_190--Hb_002174_020 Hb_000300_360 Hb_000300_360 Hb_000796_190--Hb_000300_360 Hb_000796_190--Hb_001454_320 Hb_002042_140 Hb_002042_140 Hb_010695_020--Hb_002042_140 Hb_010695_020--Hb_000796_190 Hb_010695_020--Hb_007558_120 Hb_000160_290 Hb_000160_290 Hb_010695_020--Hb_000160_290 Hb_010695_020--Hb_003935_030 Hb_000120_610 Hb_000120_610 Hb_000594_020--Hb_000120_610 Hb_000813_100 Hb_000813_100 Hb_000594_020--Hb_000813_100 Hb_002659_060 Hb_002659_060 Hb_000594_020--Hb_002659_060 Hb_004899_070 Hb_004899_070 Hb_000594_020--Hb_004899_070 Hb_002411_120 Hb_002411_120 Hb_000594_020--Hb_002411_120 Hb_004970_160 Hb_004970_160 Hb_000594_020--Hb_004970_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.67904 5.70402 3.40335 2.01816 6.08267 10.905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.39911 1.73034 1.51375 4.02808 3.36975

CAGE analysis