Hb_005016_070

Information

Type -
Description -
Location Contig5016: 68168-68452
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0005737
description histidine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_070 0.0 - - -
2 Hb_115045_010 0.2061179308 - - ATP binding protein, putative [Ricinus communis]
3 Hb_001385_090 0.2227115694 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
4 Hb_001762_070 0.2348288215 - - -
5 Hb_003927_150 0.2385495057 - - -
6 Hb_001418_060 0.2425465747 - - -
7 Hb_059952_010 0.2460061992 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
8 Hb_002204_040 0.2512111518 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
9 Hb_000962_010 0.2561159009 - - -
10 Hb_000523_100 0.2621154726 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
11 Hb_001579_040 0.2730956651 - - -
12 Hb_005839_010 0.2736345467 - - 30S ribosomal protein s13 [Camellia sinensis]
13 Hb_001385_080 0.2737475413 - - -
14 Hb_000291_130 0.2756402043 - - -
15 Hb_005601_050 0.2758502988 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
16 Hb_122567_020 0.2767881892 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
17 Hb_001231_070 0.2768757296 - - -
18 Hb_145827_010 0.2777359917 - - hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
19 Hb_187459_010 0.2796473053 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
20 Hb_001907_090 0.2803713283 - - -

Gene co-expression network

sample Hb_005016_070 Hb_005016_070 Hb_115045_010 Hb_115045_010 Hb_005016_070--Hb_115045_010 Hb_001385_090 Hb_001385_090 Hb_005016_070--Hb_001385_090 Hb_001762_070 Hb_001762_070 Hb_005016_070--Hb_001762_070 Hb_003927_150 Hb_003927_150 Hb_005016_070--Hb_003927_150 Hb_001418_060 Hb_001418_060 Hb_005016_070--Hb_001418_060 Hb_059952_010 Hb_059952_010 Hb_005016_070--Hb_059952_010 Hb_005601_050 Hb_005601_050 Hb_115045_010--Hb_005601_050 Hb_001032_030 Hb_001032_030 Hb_115045_010--Hb_001032_030 Hb_000589_230 Hb_000589_230 Hb_115045_010--Hb_000589_230 Hb_081815_010 Hb_081815_010 Hb_115045_010--Hb_081815_010 Hb_115045_010--Hb_001418_060 Hb_115578_010 Hb_115578_010 Hb_001385_090--Hb_115578_010 Hb_001385_090--Hb_001418_060 Hb_000295_090 Hb_000295_090 Hb_001385_090--Hb_000295_090 Hb_002249_110 Hb_002249_110 Hb_001385_090--Hb_002249_110 Hb_000523_100 Hb_000523_100 Hb_001385_090--Hb_000523_100 Hb_130134_020 Hb_130134_020 Hb_001385_090--Hb_130134_020 Hb_001385_050 Hb_001385_050 Hb_001762_070--Hb_001385_050 Hb_022593_060 Hb_022593_060 Hb_001762_070--Hb_022593_060 Hb_010024_010 Hb_010024_010 Hb_001762_070--Hb_010024_010 Hb_001206_070 Hb_001206_070 Hb_001762_070--Hb_001206_070 Hb_000962_010 Hb_000962_010 Hb_001762_070--Hb_000962_010 Hb_001241_060 Hb_001241_060 Hb_001762_070--Hb_001241_060 Hb_001235_060 Hb_001235_060 Hb_003927_150--Hb_001235_060 Hb_000805_300 Hb_000805_300 Hb_003927_150--Hb_000805_300 Hb_122567_020 Hb_122567_020 Hb_003927_150--Hb_122567_020 Hb_001385_080 Hb_001385_080 Hb_003927_150--Hb_001385_080 Hb_101151_030 Hb_101151_030 Hb_003927_150--Hb_101151_030 Hb_003927_150--Hb_059952_010 Hb_001418_060--Hb_130134_020 Hb_060054_010 Hb_060054_010 Hb_001418_060--Hb_060054_010 Hb_074979_030 Hb_074979_030 Hb_001418_060--Hb_074979_030 Hb_001418_060--Hb_000589_230 Hb_059952_010--Hb_122567_020 Hb_004958_040 Hb_004958_040 Hb_059952_010--Hb_004958_040 Hb_005933_010 Hb_005933_010 Hb_059952_010--Hb_005933_010 Hb_059952_010--Hb_000805_300 Hb_001454_110 Hb_001454_110 Hb_059952_010--Hb_001454_110 Hb_059952_010--Hb_001385_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.8049 1.71301 0.912447 10.7163 0 63.6024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.36302 0 0 0 0

CAGE analysis