Hb_005016_080

Information

Type -
Description -
Location Contig5016: 71728-73253
Sequence    

Annotation

kegg
ID rcu:RCOM_1354900
description metal ion binding protein, putative
nr
ID XP_012082425.1
description PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID A0A067K287
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16552 PE=4 SV=1
Gene Ontology
ID GO:0046872
description metal ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45881: 71726-73269
cDNA
(Sanger)
(ID:Location)		 041_E12.ab1: 71728-72611

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_080 0.0 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
2 Hb_002010_100 0.0782531477 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
3 Hb_002361_010 0.0810749672 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
4 Hb_005463_070 0.0873999398 - - calcium ion binding protein, putative [Ricinus communis]
5 Hb_000318_050 0.0920964841 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
6 Hb_003387_080 0.0967791218 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_001160_020 0.1068921862 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
8 Hb_007483_080 0.1071610653 - - hypothetical protein RCOM_0634810 [Ricinus communis]
9 Hb_003849_030 0.1107175696 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
10 Hb_001918_030 0.1115256719 - - -
11 Hb_003029_010 0.1138135177 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
12 Hb_002596_090 0.1257051313 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
13 Hb_093364_010 0.1258789222 - - PREDICTED: uncharacterized protein LOC105636199 [Jatropha curcas]
14 Hb_000152_410 0.1262025069 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
15 Hb_000046_430 0.1266499526 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
16 Hb_018212_010 0.1288124769 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
17 Hb_029095_010 0.1295990268 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
18 Hb_028487_040 0.129986884 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
19 Hb_005867_030 0.133109389 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
20 Hb_094439_010 0.133238536 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]

Gene co-expression network

sample Hb_005016_080 Hb_005016_080 Hb_002010_100 Hb_002010_100 Hb_005016_080--Hb_002010_100 Hb_002361_010 Hb_002361_010 Hb_005016_080--Hb_002361_010 Hb_005463_070 Hb_005463_070 Hb_005016_080--Hb_005463_070 Hb_000318_050 Hb_000318_050 Hb_005016_080--Hb_000318_050 Hb_003387_080 Hb_003387_080 Hb_005016_080--Hb_003387_080 Hb_001160_020 Hb_001160_020 Hb_005016_080--Hb_001160_020 Hb_007483_080 Hb_007483_080 Hb_002010_100--Hb_007483_080 Hb_002010_100--Hb_002361_010 Hb_002010_100--Hb_005463_070 Hb_002010_100--Hb_000318_050 Hb_000365_180 Hb_000365_180 Hb_002010_100--Hb_000365_180 Hb_002361_010--Hb_007483_080 Hb_002361_010--Hb_005463_070 Hb_002361_010--Hb_000318_050 Hb_018212_010 Hb_018212_010 Hb_002361_010--Hb_018212_010 Hb_005463_070--Hb_000318_050 Hb_005867_030 Hb_005867_030 Hb_005463_070--Hb_005867_030 Hb_005463_070--Hb_003387_080 Hb_000318_050--Hb_003387_080 Hb_000382_030 Hb_000382_030 Hb_000318_050--Hb_000382_030 Hb_000318_050--Hb_001160_020 Hb_002849_120 Hb_002849_120 Hb_003387_080--Hb_002849_120 Hb_003387_080--Hb_001160_020 Hb_006269_010 Hb_006269_010 Hb_003387_080--Hb_006269_010 Hb_007747_100 Hb_007747_100 Hb_001160_020--Hb_007747_100 Hb_003849_030 Hb_003849_030 Hb_001160_020--Hb_003849_030 Hb_001160_020--Hb_002849_120 Hb_001153_090 Hb_001153_090 Hb_001160_020--Hb_001153_090 Hb_023344_130 Hb_023344_130 Hb_001160_020--Hb_023344_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.991526 92.6366 119.463 38.9759 0.409709 0.231165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.345824 0.785892 1.07079 46.7365 58.697

CAGE analysis