Hb_005016_100

Information

Type -
Description -
Location Contig5016: 100159-100732
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45887: 98266-115048 , PASA_asmbl_45888: 97703-115343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_100 0.0 - - -
2 Hb_004032_330 0.0699432364 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
3 Hb_000770_010 0.1148608022 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
4 Hb_004604_030 0.1423091408 - - unnamed protein product [Coffea canephora]
5 Hb_002010_070 0.1514196327 - - hypothetical protein EUGRSUZ_I027342, partial [Eucalyptus grandis]
6 Hb_000614_190 0.1577341285 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
7 Hb_001357_360 0.1590989461 - - zinc finger protein, putative [Ricinus communis]
8 Hb_027337_030 0.1593754728 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
9 Hb_001971_020 0.1603275055 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
10 Hb_001391_100 0.1645409718 - - AMP dependent ligase, putative [Ricinus communis]
11 Hb_000767_010 0.166365756 - - PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Solanum lycopersicum]
12 Hb_026144_030 0.1665496434 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
13 Hb_003077_140 0.1702180649 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
14 Hb_002344_080 0.1707898865 - - PREDICTED: protein YLS2-like [Populus euphratica]
15 Hb_021409_120 0.1753329955 transcription factor TF Family: MYB-related r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_005054_280 0.1755267163 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
17 Hb_004864_020 0.1757189458 - - Polyprotein, putative [Solanum demissum]
18 Hb_000418_150 0.1767478039 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_008111_010 0.1778118643 - - hypothetical protein VITISV_021527 [Vitis vinifera]
20 Hb_004605_020 0.1780965241 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]

Gene co-expression network

sample Hb_005016_100 Hb_005016_100 Hb_004032_330 Hb_004032_330 Hb_005016_100--Hb_004032_330 Hb_000770_010 Hb_000770_010 Hb_005016_100--Hb_000770_010 Hb_004604_030 Hb_004604_030 Hb_005016_100--Hb_004604_030 Hb_002010_070 Hb_002010_070 Hb_005016_100--Hb_002010_070 Hb_000614_190 Hb_000614_190 Hb_005016_100--Hb_000614_190 Hb_001357_360 Hb_001357_360 Hb_005016_100--Hb_001357_360 Hb_004032_330--Hb_000770_010 Hb_021409_120 Hb_021409_120 Hb_004032_330--Hb_021409_120 Hb_004032_330--Hb_004604_030 Hb_027337_030 Hb_027337_030 Hb_004032_330--Hb_027337_030 Hb_003077_140 Hb_003077_140 Hb_004032_330--Hb_003077_140 Hb_000770_010--Hb_021409_120 Hb_006483_090 Hb_006483_090 Hb_000770_010--Hb_006483_090 Hb_004864_020 Hb_004864_020 Hb_000770_010--Hb_004864_020 Hb_000679_260 Hb_000679_260 Hb_000770_010--Hb_000679_260 Hb_000101_300 Hb_000101_300 Hb_004604_030--Hb_000101_300 Hb_007472_020 Hb_007472_020 Hb_004604_030--Hb_007472_020 Hb_004604_030--Hb_021409_120 Hb_004604_030--Hb_000770_010 Hb_143629_200 Hb_143629_200 Hb_002010_070--Hb_143629_200 Hb_001706_020 Hb_001706_020 Hb_002010_070--Hb_001706_020 Hb_001143_140 Hb_001143_140 Hb_002010_070--Hb_001143_140 Hb_060198_010 Hb_060198_010 Hb_002010_070--Hb_060198_010 Hb_144703_010 Hb_144703_010 Hb_002010_070--Hb_144703_010 Hb_001174_030 Hb_001174_030 Hb_002010_070--Hb_001174_030 Hb_114310_050 Hb_114310_050 Hb_000614_190--Hb_114310_050 Hb_005054_280 Hb_005054_280 Hb_000614_190--Hb_005054_280 Hb_007420_020 Hb_007420_020 Hb_000614_190--Hb_007420_020 Hb_026144_030 Hb_026144_030 Hb_000614_190--Hb_026144_030 Hb_005034_010 Hb_005034_010 Hb_000614_190--Hb_005034_010 Hb_000614_190--Hb_001174_030 Hb_001971_020 Hb_001971_020 Hb_001357_360--Hb_001971_020 Hb_001357_360--Hb_003077_140 Hb_000767_010 Hb_000767_010 Hb_001357_360--Hb_000767_010 Hb_005470_040 Hb_005470_040 Hb_001357_360--Hb_005470_040 Hb_123560_050 Hb_123560_050 Hb_001357_360--Hb_123560_050 Hb_004007_230 Hb_004007_230 Hb_001357_360--Hb_004007_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.838506 0.273064 0.568049 0 0.152449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.467013 0.822074

CAGE analysis