Hb_005016_110

Information

Type -
Description -
Location Contig5016: 106458-106919
Sequence    

Annotation

kegg
ID sbi:SORBI_04g017843
description SORBIDRAFT_04g017843, Sb04g017843; hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A0D2UBB3
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G088000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45887: 98266-115048 , PASA_asmbl_45888: 97703-115343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_110 0.0 - - -
2 Hb_002729_020 0.122894437 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
3 Hb_033594_050 0.2002344266 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
4 Hb_002585_060 0.2194134102 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
5 Hb_002815_040 0.2223756097 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
6 Hb_058095_030 0.2301078888 - - -
7 Hb_048476_070 0.2328704431 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000280_120 0.2330542452 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
9 Hb_000243_050 0.2332176628 - - ADP-ribosylation factor, putative [Ricinus communis]
10 Hb_168909_010 0.2361187442 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
11 Hb_138667_010 0.2361790806 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
12 Hb_011242_070 0.2423745476 - - beta-cyanoalanine synthase [Hevea brasiliensis]
13 Hb_004063_010 0.2428322732 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_003938_100 0.246141702 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001301_070 0.2466891431 - - -
16 Hb_003727_060 0.2470255406 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000349_160 0.2476421312 - - PREDICTED: geraniol 8-hydroxylase-like [Citrus sinensis]
18 Hb_028872_040 0.2488253287 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_114121_010 0.2495148614 - - -
20 Hb_002733_050 0.2510969574 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_005016_110 Hb_005016_110 Hb_002729_020 Hb_002729_020 Hb_005016_110--Hb_002729_020 Hb_033594_050 Hb_033594_050 Hb_005016_110--Hb_033594_050 Hb_002585_060 Hb_002585_060 Hb_005016_110--Hb_002585_060 Hb_002815_040 Hb_002815_040 Hb_005016_110--Hb_002815_040 Hb_058095_030 Hb_058095_030 Hb_005016_110--Hb_058095_030 Hb_048476_070 Hb_048476_070 Hb_005016_110--Hb_048476_070 Hb_000832_010 Hb_000832_010 Hb_002729_020--Hb_000832_010 Hb_001871_030 Hb_001871_030 Hb_002729_020--Hb_001871_030 Hb_000136_080 Hb_000136_080 Hb_002729_020--Hb_000136_080 Hb_002729_020--Hb_002815_040 Hb_114121_010 Hb_114121_010 Hb_002729_020--Hb_114121_010 Hb_000349_160 Hb_000349_160 Hb_033594_050--Hb_000349_160 Hb_033594_050--Hb_002585_060 Hb_004063_010 Hb_004063_010 Hb_033594_050--Hb_004063_010 Hb_000028_270 Hb_000028_270 Hb_033594_050--Hb_000028_270 Hb_033594_050--Hb_058095_030 Hb_002585_060--Hb_004063_010 Hb_003727_060 Hb_003727_060 Hb_002585_060--Hb_003727_060 Hb_002585_060--Hb_058095_030 Hb_138667_010 Hb_138667_010 Hb_002585_060--Hb_138667_010 Hb_000243_050 Hb_000243_050 Hb_002585_060--Hb_000243_050 Hb_000280_120 Hb_000280_120 Hb_002585_060--Hb_000280_120 Hb_000061_110 Hb_000061_110 Hb_002815_040--Hb_000061_110 Hb_002815_040--Hb_048476_070 Hb_002815_040--Hb_002585_060 Hb_011242_070 Hb_011242_070 Hb_002815_040--Hb_011242_070 Hb_000236_430 Hb_000236_430 Hb_002815_040--Hb_000236_430 Hb_000600_080 Hb_000600_080 Hb_002815_040--Hb_000600_080 Hb_058095_030--Hb_000028_270 Hb_005765_020 Hb_005765_020 Hb_058095_030--Hb_005765_020 Hb_058095_030--Hb_004063_010 Hb_118046_010 Hb_118046_010 Hb_058095_030--Hb_118046_010 Hb_008642_050 Hb_008642_050 Hb_058095_030--Hb_008642_050 Hb_005470_040 Hb_005470_040 Hb_048476_070--Hb_005470_040 Hb_031949_010 Hb_031949_010 Hb_048476_070--Hb_031949_010 Hb_000417_150 Hb_000417_150 Hb_048476_070--Hb_000417_150 Hb_026053_030 Hb_026053_030 Hb_048476_070--Hb_026053_030 Hb_067345_020 Hb_067345_020 Hb_048476_070--Hb_067345_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0839724 0.924561 0.0504924 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.200489 0.65629 1.32549

CAGE analysis