Hb_005016_120

Information

Type -
Description -
Location Contig5016: 110669-111628
Sequence    

Annotation

kegg
ID pmum:103326340
description putative ribonuclease H protein At1g65750
nr
ID XP_008226782.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID M5WID7
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024472mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease h protein at1g65750

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45887: 98266-115048 , PASA_asmbl_45888: 97703-115343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_120 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
2 Hb_001677_230 0.1498266704 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
3 Hb_001619_010 0.1517814725 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
4 Hb_002888_060 0.1677417756 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
5 Hb_000383_020 0.1757128666 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
6 Hb_000264_340 0.1765340103 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
7 Hb_005470_040 0.1788113956 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
8 Hb_003212_010 0.1799421678 - - sucrose transporter 4 [Hevea brasiliensis]
9 Hb_006096_020 0.1850162754 - - Os06g0343500 [Oryza sativa Japonica Group]
10 Hb_001963_110 0.1852996917 - - -
11 Hb_083242_020 0.1872145487 - - hypothetical protein JCGZ_20097 [Jatropha curcas]
12 Hb_082683_010 0.1874698929 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
13 Hb_000816_020 0.1910275454 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
14 Hb_002003_040 0.191558375 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
15 Hb_033594_100 0.1947087513 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000261_320 0.1989582761 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
17 Hb_000059_080 0.2005786823 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
18 Hb_002217_200 0.2036449753 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
19 Hb_048476_070 0.2038627336 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002420_010 0.2048267437 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_005016_120 Hb_005016_120 Hb_001677_230 Hb_001677_230 Hb_005016_120--Hb_001677_230 Hb_001619_010 Hb_001619_010 Hb_005016_120--Hb_001619_010 Hb_002888_060 Hb_002888_060 Hb_005016_120--Hb_002888_060 Hb_000383_020 Hb_000383_020 Hb_005016_120--Hb_000383_020 Hb_000264_340 Hb_000264_340 Hb_005016_120--Hb_000264_340 Hb_005470_040 Hb_005470_040 Hb_005016_120--Hb_005470_040 Hb_001677_230--Hb_002888_060 Hb_001677_230--Hb_001619_010 Hb_082683_010 Hb_082683_010 Hb_001677_230--Hb_082683_010 Hb_001963_110 Hb_001963_110 Hb_001677_230--Hb_001963_110 Hb_006096_020 Hb_006096_020 Hb_001677_230--Hb_006096_020 Hb_033594_100 Hb_033594_100 Hb_001677_230--Hb_033594_100 Hb_010812_140 Hb_010812_140 Hb_001619_010--Hb_010812_140 Hb_012023_010 Hb_012023_010 Hb_001619_010--Hb_012023_010 Hb_001619_010--Hb_006096_020 Hb_001619_010--Hb_001963_110 Hb_001141_040 Hb_001141_040 Hb_002888_060--Hb_001141_040 Hb_000191_100 Hb_000191_100 Hb_002888_060--Hb_000191_100 Hb_001496_120 Hb_001496_120 Hb_002888_060--Hb_001496_120 Hb_002888_060--Hb_001963_110 Hb_001268_300 Hb_001268_300 Hb_002888_060--Hb_001268_300 Hb_007320_020 Hb_007320_020 Hb_000383_020--Hb_007320_020 Hb_001971_020 Hb_001971_020 Hb_000383_020--Hb_001971_020 Hb_002003_040 Hb_002003_040 Hb_000383_020--Hb_002003_040 Hb_043939_010 Hb_043939_010 Hb_000383_020--Hb_043939_010 Hb_000383_020--Hb_000264_340 Hb_003212_010 Hb_003212_010 Hb_000264_340--Hb_003212_010 Hb_000264_340--Hb_005470_040 Hb_109489_010 Hb_109489_010 Hb_000264_340--Hb_109489_010 Hb_123560_050 Hb_123560_050 Hb_000264_340--Hb_123560_050 Hb_000597_080 Hb_000597_080 Hb_000264_340--Hb_000597_080 Hb_000264_340--Hb_001971_020 Hb_031949_010 Hb_031949_010 Hb_005470_040--Hb_031949_010 Hb_001357_360 Hb_001357_360 Hb_005470_040--Hb_001357_360 Hb_000377_160 Hb_000377_160 Hb_005470_040--Hb_000377_160 Hb_005470_040--Hb_109489_010 Hb_005470_040--Hb_123560_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.163011 0.839757 0.175428 0.329264 0 0.0521437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0533331 0 0.0769912 1.18196 1.28325

CAGE analysis