Hb_005016_150

Information

Type -
Description -
Location Contig5016: 143317-145288
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45890: 143302-145023 , PASA_asmbl_45891: 143302-145065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_150 0.0 - - -
2 Hb_001675_060 0.1016247161 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
3 Hb_000213_060 0.1082502391 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
4 Hb_001477_010 0.1187887053 - - PREDICTED: dnaJ homolog subfamily B member 13-like [Cicer arietinum]
5 Hb_181320_010 0.1214314465 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
6 Hb_003226_170 0.1217381456 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
7 Hb_000256_270 0.1253506677 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
8 Hb_002837_070 0.1254305907 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
9 Hb_002290_060 0.1307263759 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
10 Hb_174865_050 0.1340480105 - - PREDICTED: neuroguidin [Jatropha curcas]
11 Hb_002955_010 0.1351576757 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
12 Hb_010189_010 0.1383120063 - - -
13 Hb_005217_020 0.1417912515 - - PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas]
14 Hb_176117_010 0.1426851055 - - Cold-inducible RNA-binding protein [Morus notabilis]
15 Hb_001846_080 0.143427389 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
16 Hb_144898_010 0.1435893793 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
17 Hb_001252_170 0.1436128005 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
18 Hb_033642_020 0.1453544339 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
19 Hb_113216_010 0.1487423712 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
20 Hb_000172_530 0.1489644432 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005016_150 Hb_005016_150 Hb_001675_060 Hb_001675_060 Hb_005016_150--Hb_001675_060 Hb_000213_060 Hb_000213_060 Hb_005016_150--Hb_000213_060 Hb_001477_010 Hb_001477_010 Hb_005016_150--Hb_001477_010 Hb_181320_010 Hb_181320_010 Hb_005016_150--Hb_181320_010 Hb_003226_170 Hb_003226_170 Hb_005016_150--Hb_003226_170 Hb_000256_270 Hb_000256_270 Hb_005016_150--Hb_000256_270 Hb_001675_060--Hb_003226_170 Hb_001513_020 Hb_001513_020 Hb_001675_060--Hb_001513_020 Hb_001675_060--Hb_000213_060 Hb_001675_060--Hb_001477_010 Hb_001675_060--Hb_000256_270 Hb_010189_010 Hb_010189_010 Hb_000213_060--Hb_010189_010 Hb_113216_010 Hb_113216_010 Hb_000213_060--Hb_113216_010 Hb_000016_180 Hb_000016_180 Hb_000213_060--Hb_000016_180 Hb_000185_090 Hb_000185_090 Hb_000213_060--Hb_000185_090 Hb_000466_060 Hb_000466_060 Hb_000213_060--Hb_000466_060 Hb_002918_070 Hb_002918_070 Hb_000213_060--Hb_002918_070 Hb_001477_010--Hb_000256_270 Hb_118301_010 Hb_118301_010 Hb_001477_010--Hb_118301_010 Hb_001252_170 Hb_001252_170 Hb_001477_010--Hb_001252_170 Hb_002290_060 Hb_002290_060 Hb_001477_010--Hb_002290_060 Hb_002955_010 Hb_002955_010 Hb_001477_010--Hb_002955_010 Hb_012807_080 Hb_012807_080 Hb_001477_010--Hb_012807_080 Hb_176117_010 Hb_176117_010 Hb_181320_010--Hb_176117_010 Hb_144898_010 Hb_144898_010 Hb_181320_010--Hb_144898_010 Hb_004662_010 Hb_004662_010 Hb_181320_010--Hb_004662_010 Hb_000891_040 Hb_000891_040 Hb_181320_010--Hb_000891_040 Hb_000270_500 Hb_000270_500 Hb_181320_010--Hb_000270_500 Hb_061256_030 Hb_061256_030 Hb_003226_170--Hb_061256_030 Hb_003673_020 Hb_003673_020 Hb_003226_170--Hb_003673_020 Hb_002837_070 Hb_002837_070 Hb_003226_170--Hb_002837_070 Hb_001846_080 Hb_001846_080 Hb_003226_170--Hb_001846_080 Hb_174865_050 Hb_174865_050 Hb_003226_170--Hb_174865_050 Hb_000256_270--Hb_002955_010 Hb_000565_020 Hb_000565_020 Hb_000256_270--Hb_000565_020 Hb_023327_030 Hb_023327_030 Hb_000256_270--Hb_023327_030 Hb_000256_270--Hb_113216_010 Hb_000372_040 Hb_000372_040 Hb_000256_270--Hb_000372_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.7332 7.72132 8.13311 5.48337 73.1911 145.391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.938 24.617 10.7977 8.04866 6.86738

CAGE analysis