Hb_005016_160

Information

Type -
Description -
Location Contig5016: 146207-147283
Sequence    

Annotation

kegg
ID rcu:RCOM_1355250
description hypothetical protein
nr
ID XP_012082405.1
description PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
swissprot
ID Q9SYZ9
description Transcription initiation factor TFIID subunit 8 OS=Arabidopsis thaliana GN=TAF8 PE=1 SV=1
trembl
ID A0A067KA37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16539 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45892: 146277-147417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_160 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
2 Hb_005541_010 0.0653340714 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
3 Hb_000334_220 0.0655617213 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
4 Hb_012055_060 0.066697542 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
5 Hb_003052_140 0.0674044128 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
6 Hb_012564_030 0.0706058558 - - coronatine-insensitive 1 [Hevea brasiliensis]
7 Hb_000336_250 0.0777262562 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
8 Hb_000661_290 0.0839678016 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
9 Hb_002411_030 0.0863438889 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
10 Hb_000398_010 0.0887869477 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000983_090 0.0899556293 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
12 Hb_001005_190 0.091414137 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
13 Hb_003020_270 0.0925083635 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
14 Hb_000179_070 0.0928380354 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
15 Hb_000243_250 0.0928889993 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
16 Hb_008511_090 0.0929280292 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
17 Hb_011491_010 0.0931211338 - - Protein YME1, putative [Ricinus communis]
18 Hb_000818_010 0.0933685687 - - Calmodulin-domain protein kinase 5 isoform 1 [Theobroma cacao]
19 Hb_000479_220 0.0936827091 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
20 Hb_001621_150 0.0937776901 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005016_160 Hb_005016_160 Hb_005541_010 Hb_005541_010 Hb_005016_160--Hb_005541_010 Hb_000334_220 Hb_000334_220 Hb_005016_160--Hb_000334_220 Hb_012055_060 Hb_012055_060 Hb_005016_160--Hb_012055_060 Hb_003052_140 Hb_003052_140 Hb_005016_160--Hb_003052_140 Hb_012564_030 Hb_012564_030 Hb_005016_160--Hb_012564_030 Hb_000336_250 Hb_000336_250 Hb_005016_160--Hb_000336_250 Hb_140506_010 Hb_140506_010 Hb_005541_010--Hb_140506_010 Hb_005541_010--Hb_003052_140 Hb_005541_010--Hb_000334_220 Hb_005541_010--Hb_012564_030 Hb_002411_030 Hb_002411_030 Hb_005541_010--Hb_002411_030 Hb_000334_220--Hb_003052_140 Hb_000334_220--Hb_012564_030 Hb_000334_220--Hb_000336_250 Hb_000479_220 Hb_000479_220 Hb_000334_220--Hb_000479_220 Hb_000243_250 Hb_000243_250 Hb_012055_060--Hb_000243_250 Hb_003055_060 Hb_003055_060 Hb_012055_060--Hb_003055_060 Hb_001005_190 Hb_001005_190 Hb_012055_060--Hb_001005_190 Hb_011491_010 Hb_011491_010 Hb_012055_060--Hb_011491_010 Hb_008511_090 Hb_008511_090 Hb_012055_060--Hb_008511_090 Hb_003052_140--Hb_000336_250 Hb_000125_170 Hb_000125_170 Hb_003052_140--Hb_000125_170 Hb_005675_040 Hb_005675_040 Hb_003052_140--Hb_005675_040 Hb_007416_180 Hb_007416_180 Hb_003052_140--Hb_007416_180 Hb_048219_010 Hb_048219_010 Hb_012564_030--Hb_048219_010 Hb_001856_230 Hb_001856_230 Hb_012564_030--Hb_001856_230 Hb_003544_110 Hb_003544_110 Hb_012564_030--Hb_003544_110 Hb_000331_670 Hb_000331_670 Hb_012564_030--Hb_000331_670 Hb_012564_030--Hb_012055_060 Hb_003609_030 Hb_003609_030 Hb_000336_250--Hb_003609_030 Hb_031527_020 Hb_031527_020 Hb_000336_250--Hb_031527_020 Hb_001946_040 Hb_001946_040 Hb_000336_250--Hb_001946_040 Hb_000336_250--Hb_000479_220 Hb_000336_250--Hb_007416_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4678 14.2289 6.37396 6.7861 8.40107 6.73214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.35241 8.69273 11.0303 3.70882 5.08532

CAGE analysis