Hb_005016_170

Information

Type -
Description -
Location Contig5016: 149205-151924
Sequence    

Annotation

kegg
ID rcu:RCOM_1355240
description hypothetical protein
nr
ID XP_002519507.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q2HIM5
description Membrane magnesium transporter OS=Arabidopsis thaliana GN=At5g03345 PE=2 SV=1
trembl
ID B9S0I8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1355240 PE=4 SV=1
Gene Ontology
ID GO:0006661
description membrane magnesium transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45893: 148811-149247 , PASA_asmbl_45894: 149259-151558
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001158_220 0.0606267702 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
3 Hb_000465_430 0.0639993662 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
4 Hb_003502_080 0.0645567968 - - vacuolar protein sorting, putative [Ricinus communis]
5 Hb_002671_100 0.0760807806 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
6 Hb_000956_030 0.0794624366 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
7 Hb_010691_060 0.0804466592 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
8 Hb_002495_040 0.0809694531 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
9 Hb_023001_050 0.0841490966 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
10 Hb_001689_020 0.0846739975 - - hypothetical protein JCGZ_10660 [Jatropha curcas]
11 Hb_033843_010 0.0856390977 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
12 Hb_061908_010 0.0863524024 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
13 Hb_003656_130 0.0880336994 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
14 Hb_000120_500 0.0881051128 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
15 Hb_001009_040 0.088841055 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
16 Hb_004198_010 0.0891742052 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
17 Hb_002107_160 0.0898805903 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
18 Hb_001369_180 0.0902960217 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
19 Hb_007594_130 0.0909445626 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
20 Hb_012092_010 0.0915572067 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]

Gene co-expression network

sample Hb_005016_170 Hb_005016_170 Hb_001158_220 Hb_001158_220 Hb_005016_170--Hb_001158_220 Hb_000465_430 Hb_000465_430 Hb_005016_170--Hb_000465_430 Hb_003502_080 Hb_003502_080 Hb_005016_170--Hb_003502_080 Hb_002671_100 Hb_002671_100 Hb_005016_170--Hb_002671_100 Hb_000956_030 Hb_000956_030 Hb_005016_170--Hb_000956_030 Hb_010691_060 Hb_010691_060 Hb_005016_170--Hb_010691_060 Hb_002475_160 Hb_002475_160 Hb_001158_220--Hb_002475_160 Hb_007643_050 Hb_007643_050 Hb_001158_220--Hb_007643_050 Hb_061908_010 Hb_061908_010 Hb_001158_220--Hb_061908_010 Hb_002107_160 Hb_002107_160 Hb_001158_220--Hb_002107_160 Hb_001380_020 Hb_001380_020 Hb_001158_220--Hb_001380_020 Hb_012092_010 Hb_012092_010 Hb_000465_430--Hb_012092_010 Hb_002495_040 Hb_002495_040 Hb_000465_430--Hb_002495_040 Hb_000465_430--Hb_003502_080 Hb_033843_010 Hb_033843_010 Hb_000465_430--Hb_033843_010 Hb_000092_100 Hb_000092_100 Hb_000465_430--Hb_000092_100 Hb_003502_080--Hb_033843_010 Hb_023001_050 Hb_023001_050 Hb_003502_080--Hb_023001_050 Hb_021409_020 Hb_021409_020 Hb_003502_080--Hb_021409_020 Hb_000204_040 Hb_000204_040 Hb_003502_080--Hb_000204_040 Hb_007594_130 Hb_007594_130 Hb_002671_100--Hb_007594_130 Hb_040262_010 Hb_040262_010 Hb_002671_100--Hb_040262_010 Hb_004881_020 Hb_004881_020 Hb_002671_100--Hb_004881_020 Hb_144598_030 Hb_144598_030 Hb_002671_100--Hb_144598_030 Hb_004117_130 Hb_004117_130 Hb_002671_100--Hb_004117_130 Hb_000260_170 Hb_000260_170 Hb_002671_100--Hb_000260_170 Hb_004198_010 Hb_004198_010 Hb_000956_030--Hb_004198_010 Hb_003434_060 Hb_003434_060 Hb_000956_030--Hb_003434_060 Hb_000120_500 Hb_000120_500 Hb_000956_030--Hb_000120_500 Hb_002097_090 Hb_002097_090 Hb_000956_030--Hb_002097_090 Hb_004450_010 Hb_004450_010 Hb_000956_030--Hb_004450_010 Hb_000236_370 Hb_000236_370 Hb_000956_030--Hb_000236_370 Hb_001766_150 Hb_001766_150 Hb_010691_060--Hb_001766_150 Hb_000157_030 Hb_000157_030 Hb_010691_060--Hb_000157_030 Hb_003266_050 Hb_003266_050 Hb_010691_060--Hb_003266_050 Hb_185830_020 Hb_185830_020 Hb_010691_060--Hb_185830_020 Hb_002391_300 Hb_002391_300 Hb_010691_060--Hb_002391_300 Hb_003058_130 Hb_003058_130 Hb_010691_060--Hb_003058_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.4757 10.1021 12.1829 22.0827 33.0314 45.9189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.062 25.5751 13.7775 14.5583 7.97489

CAGE analysis