Hb_005018_020

Information

Type -
Description -
Location Contig5018: 15487-16875
Sequence    

Annotation

kegg
ID rcu:RCOM_0787600
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012064960.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Jatropha curcas]
swissprot
ID Q9LQQ1
description Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2 SV=1
trembl
ID A0A067LAE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05645 PE=4 SV=1
Gene Ontology
ID GO:0003677
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45899: 16338-16686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005018_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Jatropha curcas]
2 Hb_000291_010 0.08403777 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
3 Hb_060094_020 0.1017048173 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
4 Hb_000061_030 0.1096275164 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
5 Hb_001104_170 0.1096434835 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
6 Hb_002263_040 0.1122707005 - - carbon catabolite repressor protein, putative [Ricinus communis]
7 Hb_002329_020 0.1144613003 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
8 Hb_023226_070 0.1171821901 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010417_070 0.1189906143 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
10 Hb_005834_040 0.120146405 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
11 Hb_004943_030 0.1205659222 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
12 Hb_011618_070 0.1206517741 - - NMDA receptor-regulated protein [Medicago truncatula]
13 Hb_000471_140 0.1213914653 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g28640 [Prunus mume]
14 Hb_005551_020 0.1217858931 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
15 Hb_002056_100 0.1220654721 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
16 Hb_002675_130 0.122188379 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]
17 Hb_001558_060 0.1223103195 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
18 Hb_000373_230 0.1227798094 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
19 Hb_000169_080 0.1234400329 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
20 Hb_000479_320 0.1240680714 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06140, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_005018_020 Hb_005018_020 Hb_000291_010 Hb_000291_010 Hb_005018_020--Hb_000291_010 Hb_060094_020 Hb_060094_020 Hb_005018_020--Hb_060094_020 Hb_000061_030 Hb_000061_030 Hb_005018_020--Hb_000061_030 Hb_001104_170 Hb_001104_170 Hb_005018_020--Hb_001104_170 Hb_002263_040 Hb_002263_040 Hb_005018_020--Hb_002263_040 Hb_002329_020 Hb_002329_020 Hb_005018_020--Hb_002329_020 Hb_000291_010--Hb_001104_170 Hb_012239_020 Hb_012239_020 Hb_000291_010--Hb_012239_020 Hb_000291_010--Hb_060094_020 Hb_001279_170 Hb_001279_170 Hb_000291_010--Hb_001279_170 Hb_000086_420 Hb_000086_420 Hb_000291_010--Hb_000086_420 Hb_023226_070 Hb_023226_070 Hb_060094_020--Hb_023226_070 Hb_003927_040 Hb_003927_040 Hb_060094_020--Hb_003927_040 Hb_004870_050 Hb_004870_050 Hb_060094_020--Hb_004870_050 Hb_000645_170 Hb_000645_170 Hb_060094_020--Hb_000645_170 Hb_001754_030 Hb_001754_030 Hb_060094_020--Hb_001754_030 Hb_010417_070 Hb_010417_070 Hb_060094_020--Hb_010417_070 Hb_000061_030--Hb_002329_020 Hb_002783_040 Hb_002783_040 Hb_000061_030--Hb_002783_040 Hb_002267_140 Hb_002267_140 Hb_000061_030--Hb_002267_140 Hb_000061_030--Hb_002263_040 Hb_006275_020 Hb_006275_020 Hb_000061_030--Hb_006275_020 Hb_002843_120 Hb_002843_120 Hb_000061_030--Hb_002843_120 Hb_000442_010 Hb_000442_010 Hb_001104_170--Hb_000442_010 Hb_005389_160 Hb_005389_160 Hb_001104_170--Hb_005389_160 Hb_001766_020 Hb_001766_020 Hb_001104_170--Hb_001766_020 Hb_000363_400 Hb_000363_400 Hb_001104_170--Hb_000363_400 Hb_001410_020 Hb_001410_020 Hb_001104_170--Hb_001410_020 Hb_002263_040--Hb_000442_010 Hb_002798_070 Hb_002798_070 Hb_002263_040--Hb_002798_070 Hb_002636_100 Hb_002636_100 Hb_002263_040--Hb_002636_100 Hb_002263_040--Hb_002783_040 Hb_000977_120 Hb_000977_120 Hb_002263_040--Hb_000977_120 Hb_001279_120 Hb_001279_120 Hb_002329_020--Hb_001279_120 Hb_002329_020--Hb_002267_140 Hb_002085_030 Hb_002085_030 Hb_002329_020--Hb_002085_030 Hb_012194_030 Hb_012194_030 Hb_002329_020--Hb_012194_030 Hb_002329_020--Hb_001754_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.724997 2.0349 1.69326 0.545735 0.594606 0.901768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.443785 0.644533 1.3078 0.858526 1.06388

CAGE analysis