Hb_005023_010

Information

Type -
Description -
Location Contig5023: 30555-38717
Sequence    

Annotation

kegg
ID pop:POPTR_0018s10440g
description hypothetical protein
nr
ID XP_012065291.1
description PREDICTED: putative lipase ROG1 [Jatropha curcas]
swissprot
ID P53118
description Putative lipase ROG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ROG1 PE=1 SV=1
trembl
ID A0A067LHX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23017 PE=4 SV=1
Gene Ontology
ID GO:0016787
description lipase rog1 isoform x4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45906: 29726-50065
cDNA
(Sanger)
(ID:Location)		 006_I19.ab1: 29728-31797

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005023_010 0.0 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
2 Hb_090051_030 0.0716706271 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
3 Hb_001018_130 0.073495408 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
4 Hb_000300_630 0.0761183043 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
5 Hb_001018_110 0.0767424236 - - unnamed protein product [Coffea canephora]
6 Hb_001633_130 0.0809754282 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
7 Hb_000146_050 0.0865365401 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
8 Hb_000370_020 0.0929287682 - - conserved hypothetical protein [Ricinus communis]
9 Hb_082821_010 0.0939781676 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
10 Hb_044736_010 0.0962098186 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_003994_280 0.0964247301 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
12 Hb_000179_220 0.0979100874 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
13 Hb_000107_200 0.1006052372 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
14 Hb_030736_020 0.1007044264 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002445_120 0.1013645761 - - secretory carrier membrane protein, putative [Ricinus communis]
16 Hb_012322_020 0.1033956884 - - -
17 Hb_001024_020 0.1038947426 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
18 Hb_054865_150 0.105344738 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
19 Hb_001377_270 0.107497746 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]
20 Hb_006618_120 0.1075621118 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]

Gene co-expression network

sample Hb_005023_010 Hb_005023_010 Hb_090051_030 Hb_090051_030 Hb_005023_010--Hb_090051_030 Hb_001018_130 Hb_001018_130 Hb_005023_010--Hb_001018_130 Hb_000300_630 Hb_000300_630 Hb_005023_010--Hb_000300_630 Hb_001018_110 Hb_001018_110 Hb_005023_010--Hb_001018_110 Hb_001633_130 Hb_001633_130 Hb_005023_010--Hb_001633_130 Hb_000146_050 Hb_000146_050 Hb_005023_010--Hb_000146_050 Hb_082821_010 Hb_082821_010 Hb_090051_030--Hb_082821_010 Hb_090051_030--Hb_001633_130 Hb_090051_030--Hb_000146_050 Hb_033642_030 Hb_033642_030 Hb_090051_030--Hb_033642_030 Hb_006455_120 Hb_006455_120 Hb_090051_030--Hb_006455_120 Hb_032050_040 Hb_032050_040 Hb_001018_130--Hb_032050_040 Hb_000107_200 Hb_000107_200 Hb_001018_130--Hb_000107_200 Hb_001018_130--Hb_000146_050 Hb_001018_130--Hb_001018_110 Hb_002445_120 Hb_002445_120 Hb_001018_130--Hb_002445_120 Hb_006618_120 Hb_006618_120 Hb_000300_630--Hb_006618_120 Hb_004627_040 Hb_004627_040 Hb_000300_630--Hb_004627_040 Hb_000300_630--Hb_001018_110 Hb_001699_100 Hb_001699_100 Hb_000300_630--Hb_001699_100 Hb_000300_630--Hb_001633_130 Hb_044736_010 Hb_044736_010 Hb_001018_110--Hb_044736_010 Hb_003994_280 Hb_003994_280 Hb_001018_110--Hb_003994_280 Hb_072922_010 Hb_072922_010 Hb_001018_110--Hb_072922_010 Hb_001633_130--Hb_082821_010 Hb_001633_130--Hb_000146_050 Hb_001633_130--Hb_006455_120 Hb_001159_130 Hb_001159_130 Hb_001633_130--Hb_001159_130 Hb_003177_030 Hb_003177_030 Hb_001633_130--Hb_003177_030 Hb_012322_020 Hb_012322_020 Hb_000146_050--Hb_012322_020 Hb_158062_010 Hb_158062_010 Hb_000146_050--Hb_158062_010 Hb_000603_150 Hb_000603_150 Hb_000146_050--Hb_000603_150 Hb_000205_300 Hb_000205_300 Hb_000146_050--Hb_000205_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.46511 6.91211 5.77004 17.6358 9.34777 13.547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.63527 8.90296 10.6748 4.46127 8.99606

CAGE analysis