Hb_005023_030

Information

Type -
Description -
Location Contig5023: 50030-50389
Sequence    

Annotation

kegg
ID mdm:103417254
description uncharacterized LOC103417254
nr
ID XP_008353669.1
description PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45906: 29726-50065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005023_030 0.0 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
2 Hb_000107_200 0.0974452056 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
3 Hb_001135_140 0.0990507184 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
4 Hb_001386_140 0.1104120255 - - PREDICTED: B2 protein [Jatropha curcas]
5 Hb_002067_120 0.1113464319 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
6 Hb_010565_010 0.1147575182 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
7 Hb_026228_020 0.1160374031 - - PREDICTED: uncharacterized protein LOC105632747 [Jatropha curcas]
8 Hb_001018_130 0.1232764081 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
9 Hb_005023_010 0.1233000751 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
10 Hb_002445_120 0.1255302262 - - secretory carrier membrane protein, putative [Ricinus communis]
11 Hb_008643_040 0.1262207821 - - PREDICTED: jacalin-related lectin 3-like [Jatropha curcas]
12 Hb_168973_010 0.1263229155 - - -
13 Hb_008096_030 0.1301084732 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
14 Hb_000991_070 0.1325156948 - - phytochrome A specific signal transduction component family protein [Populus trichocarpa]
15 Hb_006198_080 0.1363817553 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
16 Hb_020665_040 0.1381385018 transcription factor TF Family: Jumonji PREDICTED: trichohyalin-like [Malus domestica]
17 Hb_001018_110 0.1392989259 - - unnamed protein product [Coffea canephora]
18 Hb_000606_080 0.1414979049 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
19 Hb_006663_090 0.142409778 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
20 Hb_115107_010 0.1426234189 - - Early-responsive to dehydration stress protein (ERD4) isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_005023_030 Hb_005023_030 Hb_000107_200 Hb_000107_200 Hb_005023_030--Hb_000107_200 Hb_001135_140 Hb_001135_140 Hb_005023_030--Hb_001135_140 Hb_001386_140 Hb_001386_140 Hb_005023_030--Hb_001386_140 Hb_002067_120 Hb_002067_120 Hb_005023_030--Hb_002067_120 Hb_010565_010 Hb_010565_010 Hb_005023_030--Hb_010565_010 Hb_026228_020 Hb_026228_020 Hb_005023_030--Hb_026228_020 Hb_001018_130 Hb_001018_130 Hb_000107_200--Hb_001018_130 Hb_008120_010 Hb_008120_010 Hb_000107_200--Hb_008120_010 Hb_002445_120 Hb_002445_120 Hb_000107_200--Hb_002445_120 Hb_000107_200--Hb_002067_120 Hb_000606_090 Hb_000606_090 Hb_000107_200--Hb_000606_090 Hb_001135_060 Hb_001135_060 Hb_000107_200--Hb_001135_060 Hb_002110_040 Hb_002110_040 Hb_001135_140--Hb_002110_040 Hb_115107_010 Hb_115107_010 Hb_001135_140--Hb_115107_010 Hb_000359_140 Hb_000359_140 Hb_001135_140--Hb_000359_140 Hb_001135_140--Hb_002067_120 Hb_001135_140--Hb_001018_130 Hb_001386_140--Hb_010565_010 Hb_006663_090 Hb_006663_090 Hb_001386_140--Hb_006663_090 Hb_001386_140--Hb_002067_120 Hb_115477_010 Hb_115477_010 Hb_001386_140--Hb_115477_010 Hb_054586_020 Hb_054586_020 Hb_001386_140--Hb_054586_020 Hb_012023_020 Hb_012023_020 Hb_002067_120--Hb_012023_020 Hb_002067_120--Hb_010565_010 Hb_006951_020 Hb_006951_020 Hb_002067_120--Hb_006951_020 Hb_126295_010 Hb_126295_010 Hb_002067_120--Hb_126295_010 Hb_000606_080 Hb_000606_080 Hb_002067_120--Hb_000606_080 Hb_010565_010--Hb_000606_080 Hb_004934_070 Hb_004934_070 Hb_010565_010--Hb_004934_070 Hb_005714_130 Hb_005714_130 Hb_010565_010--Hb_005714_130 Hb_072922_010 Hb_072922_010 Hb_026228_020--Hb_072922_010 Hb_026228_020--Hb_001018_130 Hb_001018_110 Hb_001018_110 Hb_026228_020--Hb_001018_110 Hb_001318_200 Hb_001318_200 Hb_026228_020--Hb_001318_200 Hb_026228_020--Hb_001135_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.5069 18.9023 15.5581 56.0476 21.1924 73.9902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.0826 24.7625 29.2615 11.3089 17.9761

CAGE analysis