Hb_005028_010

Information

Type -
Description -
Location Contig5028: 13185-21613
Sequence    

Annotation

kegg
ID rcu:RCOM_1673040
description interferon-induced guanylate-binding protein, putative
nr
ID XP_002509420.1
description interferon-induced guanylate-binding protein, putative [Ricinus communis]
swissprot
ID Q5R9T9
description Guanylate-binding protein 6 OS=Pongo abelii GN=GBP6 PE=2 SV=1
trembl
ID B9RB86
description Interferon-induced guanylate-binding protein, putative OS=Ricinus communis GN=RCOM_1673040 PE=4 SV=1
Gene Ontology
ID GO:0005730
description interferon-induced guanylate-binding protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45907: 13062-21603
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005028_010 0.0 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
2 Hb_012760_200 0.0607327421 - - protein phsophatase-2a, putative [Ricinus communis]
3 Hb_000212_280 0.075568458 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
4 Hb_000640_210 0.0756635142 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
5 Hb_000573_040 0.0787091161 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
6 Hb_025048_040 0.0791280927 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
7 Hb_001140_080 0.0843031564 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
8 Hb_002025_140 0.0854392964 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
9 Hb_003216_110 0.087785693 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
10 Hb_113216_010 0.0909719834 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
11 Hb_001348_140 0.0919367432 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004032_350 0.0929217635 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
13 Hb_001034_020 0.0933540568 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
14 Hb_000331_480 0.0950143434 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
15 Hb_000211_090 0.0974011778 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
16 Hb_012807_120 0.0978621246 - - metal ion binding protein, putative [Ricinus communis]
17 Hb_009615_110 0.0984979121 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
18 Hb_002837_070 0.0987614042 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
19 Hb_001259_030 0.1014638516 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
20 Hb_002374_150 0.1019320533 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005028_010 Hb_005028_010 Hb_012760_200 Hb_012760_200 Hb_005028_010--Hb_012760_200 Hb_000212_280 Hb_000212_280 Hb_005028_010--Hb_000212_280 Hb_000640_210 Hb_000640_210 Hb_005028_010--Hb_000640_210 Hb_000573_040 Hb_000573_040 Hb_005028_010--Hb_000573_040 Hb_025048_040 Hb_025048_040 Hb_005028_010--Hb_025048_040 Hb_001140_080 Hb_001140_080 Hb_005028_010--Hb_001140_080 Hb_004032_350 Hb_004032_350 Hb_012760_200--Hb_004032_350 Hb_001034_020 Hb_001034_020 Hb_012760_200--Hb_001034_020 Hb_013753_010 Hb_013753_010 Hb_012760_200--Hb_013753_010 Hb_012760_200--Hb_000212_280 Hb_000331_480 Hb_000331_480 Hb_012760_200--Hb_000331_480 Hb_000212_280--Hb_025048_040 Hb_113216_010 Hb_113216_010 Hb_000212_280--Hb_113216_010 Hb_002374_150 Hb_002374_150 Hb_000212_280--Hb_002374_150 Hb_000212_280--Hb_000331_480 Hb_005000_270 Hb_005000_270 Hb_000212_280--Hb_005000_270 Hb_000322_170 Hb_000322_170 Hb_000640_210--Hb_000322_170 Hb_000076_290 Hb_000076_290 Hb_000640_210--Hb_000076_290 Hb_000174_200 Hb_000174_200 Hb_000640_210--Hb_000174_200 Hb_000640_210--Hb_012760_200 Hb_001178_060 Hb_001178_060 Hb_000640_210--Hb_001178_060 Hb_002025_140 Hb_002025_140 Hb_000573_040--Hb_002025_140 Hb_000684_180 Hb_000684_180 Hb_000573_040--Hb_000684_180 Hb_000134_360 Hb_000134_360 Hb_000573_040--Hb_000134_360 Hb_000573_040--Hb_000212_280 Hb_004531_090 Hb_004531_090 Hb_000573_040--Hb_004531_090 Hb_025048_040--Hb_000331_480 Hb_000270_450 Hb_000270_450 Hb_025048_040--Hb_000270_450 Hb_025048_040--Hb_012760_200 Hb_001009_050 Hb_001009_050 Hb_025048_040--Hb_001009_050 Hb_000282_150 Hb_000282_150 Hb_001140_080--Hb_000282_150 Hb_012807_120 Hb_012807_120 Hb_001140_080--Hb_012807_120 Hb_001140_080--Hb_000270_450 Hb_006478_070 Hb_006478_070 Hb_001140_080--Hb_006478_070 Hb_003506_040 Hb_003506_040 Hb_001140_080--Hb_003506_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
568.175 172.558 40.2244 34.3287 444.881 573.534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
254.196 62.8036 112.572 76.8105 33.5095

CAGE analysis