Hb_005034_010

Information

Type -
Description -
Location Contig5034: 8035-9702
Sequence    

Annotation

kegg
ID rcu:RCOM_0366700
description alcohol dehydrogenase, putative (EC:1.1.1.255)
nr
ID XP_002534286.1
description alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9ZRF1
description Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1
trembl
ID B9T7R7
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0366700 PE=3 SV=1
Gene Ontology
ID GO:0008270
description probable mannitol dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005034_010 0.0 - - alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_001174_030 0.0743980907 - - unnamed protein product [Vitis vinifera]
3 Hb_003562_040 0.0748185261 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
4 Hb_005054_280 0.0866112478 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
5 Hb_174101_010 0.0874338841 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
6 Hb_000614_190 0.0885149517 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
7 Hb_003835_030 0.0979448739 - - glycosyltransferase, partial [Arabidopsis thaliana]
8 Hb_008092_020 0.0983722579 - - transcription factor, putative [Ricinus communis]
9 Hb_000472_020 0.1046795016 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
10 Hb_002000_130 0.104961322 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
11 Hb_001143_140 0.1054412452 - - Aldehyde dehydrogenase, putative [Ricinus communis]
12 Hb_001544_070 0.1109236876 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
13 Hb_001706_020 0.1124074288 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
14 Hb_144703_010 0.1140885593 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
15 Hb_005074_010 0.1167180852 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
16 Hb_026144_030 0.1179811656 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
17 Hb_114310_050 0.1184607373 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
18 Hb_004306_140 0.1184622374 - - calcineurin-like phosphoesterase [Manihot esculenta]
19 Hb_001013_050 0.1190119474 - - unnamed protein product [Coffea canephora]
20 Hb_006269_010 0.1215952265 - - hypothetical protein JCGZ_21552 [Jatropha curcas]

Gene co-expression network

sample Hb_005034_010 Hb_005034_010 Hb_001174_030 Hb_001174_030 Hb_005034_010--Hb_001174_030 Hb_003562_040 Hb_003562_040 Hb_005034_010--Hb_003562_040 Hb_005054_280 Hb_005054_280 Hb_005034_010--Hb_005054_280 Hb_174101_010 Hb_174101_010 Hb_005034_010--Hb_174101_010 Hb_000614_190 Hb_000614_190 Hb_005034_010--Hb_000614_190 Hb_003835_030 Hb_003835_030 Hb_005034_010--Hb_003835_030 Hb_001544_070 Hb_001544_070 Hb_001174_030--Hb_001544_070 Hb_001706_020 Hb_001706_020 Hb_001174_030--Hb_001706_020 Hb_001174_030--Hb_174101_010 Hb_000472_020 Hb_000472_020 Hb_001174_030--Hb_000472_020 Hb_001174_030--Hb_003562_040 Hb_003562_040--Hb_005054_280 Hb_005074_010 Hb_005074_010 Hb_003562_040--Hb_005074_010 Hb_175670_010 Hb_175670_010 Hb_003562_040--Hb_175670_010 Hb_007007_090 Hb_007007_090 Hb_003562_040--Hb_007007_090 Hb_007420_020 Hb_007420_020 Hb_005054_280--Hb_007420_020 Hb_114310_050 Hb_114310_050 Hb_005054_280--Hb_114310_050 Hb_005054_280--Hb_000614_190 Hb_008111_010 Hb_008111_010 Hb_005054_280--Hb_008111_010 Hb_174101_010--Hb_001544_070 Hb_004166_020 Hb_004166_020 Hb_174101_010--Hb_004166_020 Hb_008092_020 Hb_008092_020 Hb_174101_010--Hb_008092_020 Hb_174101_010--Hb_000472_020 Hb_000614_190--Hb_114310_050 Hb_000614_190--Hb_007420_020 Hb_026144_030 Hb_026144_030 Hb_000614_190--Hb_026144_030 Hb_000614_190--Hb_001174_030 Hb_003835_030--Hb_008092_020 Hb_001013_050 Hb_001013_050 Hb_003835_030--Hb_001013_050 Hb_002000_130 Hb_002000_130 Hb_003835_030--Hb_002000_130 Hb_000589_330 Hb_000589_330 Hb_003835_030--Hb_000589_330 Hb_003835_030--Hb_000472_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.49787 0.905301 2.02098 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0397084 0 1.19755 1.78752

CAGE analysis