Hb_005038_020

Information

Type -
Description -
Location Contig5038: 22000-24104
Sequence    

Annotation

kegg
ID rcu:RCOM_0723330
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_002524865.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q96DI7
description U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1
trembl
ID B9SFU6
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0723330 PE=4 SV=1
Gene Ontology
ID GO:0019013
description u5 small nuclear ribonucleoprotein 40 kda protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45921: 22085-24625 , PASA_asmbl_45922: 22085-34369
cDNA
(Sanger)
(ID:Location)		 012_P05.ab1: 22855-24578 , 037_K16.ab1: 22846-24590

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005038_020 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_005399_020 0.0798423014 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
3 Hb_012395_160 0.0867636761 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
4 Hb_002849_080 0.0899203571 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
5 Hb_148209_020 0.0942672288 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
6 Hb_002078_420 0.0996459651 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
7 Hb_000174_200 0.1020248762 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
8 Hb_183510_010 0.1059850896 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
9 Hb_000116_280 0.1083744152 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
10 Hb_000076_290 0.1088486306 - - translation factor sui1, putative [Ricinus communis]
11 Hb_000016_280 0.1092716488 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
12 Hb_002977_010 0.1095997908 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
13 Hb_003299_080 0.1111240471 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
14 Hb_006316_070 0.1116258634 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
15 Hb_000685_080 0.1123656627 - - protein binding protein, putative [Ricinus communis]
16 Hb_002002_030 0.1123999789 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
17 Hb_000367_290 0.1153460016 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
18 Hb_004032_350 0.1159343596 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
19 Hb_013753_010 0.1162843154 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
20 Hb_000735_120 0.1162900827 - - PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005038_020 Hb_005038_020 Hb_005399_020 Hb_005399_020 Hb_005038_020--Hb_005399_020 Hb_012395_160 Hb_012395_160 Hb_005038_020--Hb_012395_160 Hb_002849_080 Hb_002849_080 Hb_005038_020--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_005038_020--Hb_148209_020 Hb_002078_420 Hb_002078_420 Hb_005038_020--Hb_002078_420 Hb_000174_200 Hb_000174_200 Hb_005038_020--Hb_000174_200 Hb_000116_280 Hb_000116_280 Hb_005399_020--Hb_000116_280 Hb_005399_020--Hb_012395_160 Hb_000685_080 Hb_000685_080 Hb_005399_020--Hb_000685_080 Hb_000367_290 Hb_000367_290 Hb_005399_020--Hb_000367_290 Hb_005399_020--Hb_148209_020 Hb_012395_160--Hb_148209_020 Hb_001584_170 Hb_001584_170 Hb_012395_160--Hb_001584_170 Hb_006316_070 Hb_006316_070 Hb_012395_160--Hb_006316_070 Hb_012395_160--Hb_000116_280 Hb_002849_080--Hb_148209_020 Hb_002849_080--Hb_006316_070 Hb_002977_010 Hb_002977_010 Hb_002849_080--Hb_002977_010 Hb_002609_010 Hb_002609_010 Hb_002849_080--Hb_002609_010 Hb_011465_030 Hb_011465_030 Hb_002849_080--Hb_011465_030 Hb_148209_020--Hb_006316_070 Hb_002477_150 Hb_002477_150 Hb_148209_020--Hb_002477_150 Hb_148209_020--Hb_002977_010 Hb_000029_160 Hb_000029_160 Hb_002078_420--Hb_000029_160 Hb_000172_550 Hb_000172_550 Hb_002078_420--Hb_000172_550 Hb_000016_280 Hb_000016_280 Hb_002078_420--Hb_000016_280 Hb_013753_010 Hb_013753_010 Hb_002078_420--Hb_013753_010 Hb_000331_480 Hb_000331_480 Hb_002078_420--Hb_000331_480 Hb_000076_290 Hb_000076_290 Hb_002078_420--Hb_000076_290 Hb_000174_200--Hb_000076_290 Hb_000640_210 Hb_000640_210 Hb_000174_200--Hb_000640_210 Hb_004032_350 Hb_004032_350 Hb_000174_200--Hb_004032_350 Hb_015401_020 Hb_015401_020 Hb_000174_200--Hb_015401_020 Hb_000322_170 Hb_000322_170 Hb_000174_200--Hb_000322_170 Hb_005144_040 Hb_005144_040 Hb_000174_200--Hb_005144_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
446.411 430.792 35.9153 53.6841 503.426 420.552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
141.758 86.1866 174.83 102.833 29.6337

CAGE analysis