Hb_005040_010

Information

Type -
Description -
Location Contig5040: 29077-31424
Sequence    

Annotation

kegg
ID rcu:RCOM_1110360
description hypothetical protein
nr
ID XP_002521632.1
description hypothetical protein RCOM_1110360 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S6L3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1110360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005040_010 0.0 - - hypothetical protein RCOM_1110360 [Ricinus communis]
2 Hb_006590_030 0.0477199364 - - unknown [Populus trichocarpa]
3 Hb_165552_020 0.07617504 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
4 Hb_011609_060 0.0919418783 - - PREDICTED: cytokinin hydroxylase [Jatropha curcas]
5 Hb_001957_050 0.0960659693 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_002420_030 0.0962133838 - - Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_039410_010 0.1002218743 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
8 Hb_043115_010 0.1108325208 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
9 Hb_004458_010 0.1120645202 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
10 Hb_002422_010 0.1184983286 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
11 Hb_000983_180 0.1195981721 - - cytochrome P450, putative [Ricinus communis]
12 Hb_000770_020 0.1217267787 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
13 Hb_011045_020 0.121739867 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
14 Hb_000302_050 0.1217635514 - - -
15 Hb_126916_010 0.1217808752 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
16 Hb_010374_010 0.1219006819 - - TMV resistance protein N, putative [Ricinus communis]
17 Hb_006856_060 0.1219176508 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
18 Hb_005839_070 0.1219278139 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
19 Hb_003453_070 0.1222410585 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
20 Hb_005096_020 0.1227673773 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_005040_010 Hb_005040_010 Hb_006590_030 Hb_006590_030 Hb_005040_010--Hb_006590_030 Hb_165552_020 Hb_165552_020 Hb_005040_010--Hb_165552_020 Hb_011609_060 Hb_011609_060 Hb_005040_010--Hb_011609_060 Hb_001957_050 Hb_001957_050 Hb_005040_010--Hb_001957_050 Hb_002420_030 Hb_002420_030 Hb_005040_010--Hb_002420_030 Hb_039410_010 Hb_039410_010 Hb_005040_010--Hb_039410_010 Hb_000953_160 Hb_000953_160 Hb_006590_030--Hb_000953_160 Hb_003910_030 Hb_003910_030 Hb_006590_030--Hb_003910_030 Hb_061641_010 Hb_061641_010 Hb_006590_030--Hb_061641_010 Hb_004077_010 Hb_004077_010 Hb_006590_030--Hb_004077_010 Hb_169511_020 Hb_169511_020 Hb_006590_030--Hb_169511_020 Hb_165552_020--Hb_002420_030 Hb_007728_010 Hb_007728_010 Hb_165552_020--Hb_007728_010 Hb_010573_030 Hb_010573_030 Hb_165552_020--Hb_010573_030 Hb_165552_020--Hb_011609_060 Hb_010012_020 Hb_010012_020 Hb_165552_020--Hb_010012_020 Hb_092044_010 Hb_092044_010 Hb_011609_060--Hb_092044_010 Hb_000984_120 Hb_000984_120 Hb_011609_060--Hb_000984_120 Hb_170979_010 Hb_170979_010 Hb_011609_060--Hb_170979_010 Hb_012753_100 Hb_012753_100 Hb_011609_060--Hb_012753_100 Hb_002869_040 Hb_002869_040 Hb_001957_050--Hb_002869_040 Hb_001957_050--Hb_006590_030 Hb_000167_090 Hb_000167_090 Hb_001957_050--Hb_000167_090 Hb_001957_050--Hb_039410_010 Hb_001957_050--Hb_002420_030 Hb_002420_030--Hb_010012_020 Hb_003674_010 Hb_003674_010 Hb_002420_030--Hb_003674_010 Hb_002420_030--Hb_039410_010 Hb_000203_090 Hb_000203_090 Hb_039410_010--Hb_000203_090 Hb_039410_010--Hb_000167_090 Hb_039410_010--Hb_165552_020 Hb_003602_080 Hb_003602_080 Hb_039410_010--Hb_003602_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.550263 0.0307665 0.468354 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis