Hb_005043_010

Information

Type -
Description -
Location Contig5043: 5161-9799
Sequence    

Annotation

kegg
ID rcu:RCOM_0358080
description calcium ion binding protein, putative
nr
ID XP_002534034.1
description calcium ion binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T715
description Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_0358080 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45960: 5234-9657
cDNA
(Sanger)
(ID:Location)		 019_N01.ab1: 5236-8947

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005043_010 0.0 - - calcium ion binding protein, putative [Ricinus communis]
2 Hb_000563_550 0.0974651356 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
3 Hb_005188_090 0.1020702704 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
4 Hb_007416_270 0.1074535591 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
5 Hb_000236_140 0.1207601673 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
6 Hb_000172_560 0.1234494381 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
7 Hb_000705_240 0.1236955833 - - DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative [Ricinus communis]
8 Hb_005701_010 0.1263996498 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
9 Hb_000865_060 0.1268696188 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
10 Hb_002603_160 0.1295464204 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
11 Hb_001454_190 0.1317362086 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
12 Hb_000143_030 0.1334424593 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
13 Hb_001811_030 0.1343138203 - - Beta-ureidopropionase, putative [Ricinus communis]
14 Hb_000479_130 0.1350497936 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]
15 Hb_003687_100 0.1361279613 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
16 Hb_000362_120 0.1367413769 - - glutamate receptor 2 plant, putative [Ricinus communis]
17 Hb_001329_300 0.1376496221 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
18 Hb_031862_110 0.1381649124 - - calcium-dependent protein kinase [Hevea brasiliensis]
19 Hb_001002_030 0.140728166 - - PREDICTED: uncharacterized protein LOC105643537 [Jatropha curcas]
20 Hb_005000_070 0.141369601 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]

Gene co-expression network

sample Hb_005043_010 Hb_005043_010 Hb_000563_550 Hb_000563_550 Hb_005043_010--Hb_000563_550 Hb_005188_090 Hb_005188_090 Hb_005043_010--Hb_005188_090 Hb_007416_270 Hb_007416_270 Hb_005043_010--Hb_007416_270 Hb_000236_140 Hb_000236_140 Hb_005043_010--Hb_000236_140 Hb_000172_560 Hb_000172_560 Hb_005043_010--Hb_000172_560 Hb_000705_240 Hb_000705_240 Hb_005043_010--Hb_000705_240 Hb_005701_010 Hb_005701_010 Hb_000563_550--Hb_005701_010 Hb_148209_110 Hb_148209_110 Hb_000563_550--Hb_148209_110 Hb_002603_160 Hb_002603_160 Hb_000563_550--Hb_002603_160 Hb_002551_020 Hb_002551_020 Hb_000563_550--Hb_002551_020 Hb_002897_060 Hb_002897_060 Hb_000563_550--Hb_002897_060 Hb_005188_090--Hb_000172_560 Hb_005188_090--Hb_002603_160 Hb_005188_090--Hb_000236_140 Hb_005188_090--Hb_007416_270 Hb_003687_100 Hb_003687_100 Hb_005188_090--Hb_003687_100 Hb_001002_030 Hb_001002_030 Hb_007416_270--Hb_001002_030 Hb_007416_270--Hb_000236_140 Hb_007416_270--Hb_003687_100 Hb_000865_060 Hb_000865_060 Hb_007416_270--Hb_000865_060 Hb_000479_130 Hb_000479_130 Hb_007416_270--Hb_000479_130 Hb_008695_210 Hb_008695_210 Hb_007416_270--Hb_008695_210 Hb_000236_140--Hb_003687_100 Hb_004128_180 Hb_004128_180 Hb_000236_140--Hb_004128_180 Hb_000236_140--Hb_000479_130 Hb_007075_050 Hb_007075_050 Hb_000236_140--Hb_007075_050 Hb_000236_140--Hb_000172_560 Hb_000172_560--Hb_007416_270 Hb_000172_560--Hb_000479_130 Hb_001189_050 Hb_001189_050 Hb_000172_560--Hb_001189_050 Hb_000172_560--Hb_003687_100 Hb_031862_110 Hb_031862_110 Hb_000705_240--Hb_031862_110 Hb_000676_150 Hb_000676_150 Hb_000705_240--Hb_000676_150 Hb_000143_030 Hb_000143_030 Hb_000705_240--Hb_000143_030 Hb_172932_010 Hb_172932_010 Hb_000705_240--Hb_172932_010 Hb_000482_090 Hb_000482_090 Hb_000705_240--Hb_000482_090 Hb_000334_150 Hb_000334_150 Hb_000705_240--Hb_000334_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.4688 10.2529 15.3456 6.71923 35.803 36.3321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.2965 36.1134 113.599 34.1653 24.1127

CAGE analysis