Hb_005045_050

Information

Type transcription factor
Description TF Family: C2H2
Location Contig5045: 25115-25972
Sequence    

Annotation

kegg
ID rcu:RCOM_0922240
description zinc finger protein, putative
nr
ID XP_012076458.1
description PREDICTED: zinc finger protein 3 [Jatropha curcas]
swissprot
ID Q39262
description Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1
trembl
ID A0A067KBD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07107 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005045_050 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 3 [Jatropha curcas]
2 Hb_118094_010 0.2447696121 - - hypothetical protein POPTR_0011s06595g [Populus trichocarpa]
3 Hb_005363_010 0.257227076 - - hypothetical protein JCGZ_13835 [Jatropha curcas]
4 Hb_002157_090 0.2618744325 - - hypothetical protein VITISV_041741 [Vitis vinifera]
5 Hb_001563_020 0.2669103748 transcription factor TF Family: TRAF aberrant large forked product, putative [Ricinus communis]
6 Hb_029243_010 0.2813802786 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
7 Hb_133661_010 0.2857339845 - - hypothetical protein JCGZ_11734 [Jatropha curcas]
8 Hb_001584_030 0.2893646178 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Nelumbo nucifera]
9 Hb_001999_240 0.2901191078 - - PREDICTED: josephin-like protein [Populus euphratica]
10 Hb_000445_010 0.2931672359 - - PREDICTED: uncharacterized protein LOC105113411 [Populus euphratica]
11 Hb_004158_100 0.3003087585 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
12 Hb_000307_120 0.3027891569 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
13 Hb_000649_310 0.3056613564 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
14 Hb_012753_180 0.3059059807 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
15 Hb_000418_080 0.3141852486 - - PREDICTED: uncharacterized protein LOC105124652 [Populus euphratica]
16 Hb_000603_010 0.321527619 - - PREDICTED: transmembrane protein 87A-like [Nelumbo nucifera]
17 Hb_003020_180 0.3293158714 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
18 Hb_009252_120 0.3300668044 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000504_110 0.3307899564 - - F-box/LRR-repeat protein, putative [Ricinus communis]
20 Hb_001221_520 0.3317173532 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005045_050 Hb_005045_050 Hb_118094_010 Hb_118094_010 Hb_005045_050--Hb_118094_010 Hb_005363_010 Hb_005363_010 Hb_005045_050--Hb_005363_010 Hb_002157_090 Hb_002157_090 Hb_005045_050--Hb_002157_090 Hb_001563_020 Hb_001563_020 Hb_005045_050--Hb_001563_020 Hb_029243_010 Hb_029243_010 Hb_005045_050--Hb_029243_010 Hb_133661_010 Hb_133661_010 Hb_005045_050--Hb_133661_010 Hb_118094_010--Hb_005363_010 Hb_004158_100 Hb_004158_100 Hb_118094_010--Hb_004158_100 Hb_001507_030 Hb_001507_030 Hb_118094_010--Hb_001507_030 Hb_001221_520 Hb_001221_520 Hb_118094_010--Hb_001221_520 Hb_000318_080 Hb_000318_080 Hb_118094_010--Hb_000318_080 Hb_015586_010 Hb_015586_010 Hb_118094_010--Hb_015586_010 Hb_005363_010--Hb_001221_520 Hb_005363_010--Hb_001507_030 Hb_001999_240 Hb_001999_240 Hb_005363_010--Hb_001999_240 Hb_003020_180 Hb_003020_180 Hb_005363_010--Hb_003020_180 Hb_004899_310 Hb_004899_310 Hb_005363_010--Hb_004899_310 Hb_001584_030 Hb_001584_030 Hb_002157_090--Hb_001584_030 Hb_002157_090--Hb_001563_020 Hb_004241_010 Hb_004241_010 Hb_002157_090--Hb_004241_010 Hb_002157_090--Hb_015586_010 Hb_012379_010 Hb_012379_010 Hb_002157_090--Hb_012379_010 Hb_012008_010 Hb_012008_010 Hb_002157_090--Hb_012008_010 Hb_001563_020--Hb_001584_030 Hb_002081_170 Hb_002081_170 Hb_001563_020--Hb_002081_170 Hb_000603_010 Hb_000603_010 Hb_001563_020--Hb_000603_010 Hb_000414_150 Hb_000414_150 Hb_001563_020--Hb_000414_150 Hb_001563_020--Hb_004241_010 Hb_029243_010--Hb_012008_010 Hb_000418_080 Hb_000418_080 Hb_029243_010--Hb_000418_080 Hb_009233_030 Hb_009233_030 Hb_029243_010--Hb_009233_030 Hb_029243_010--Hb_001507_030 Hb_001771_080 Hb_001771_080 Hb_029243_010--Hb_001771_080 Hb_002272_010 Hb_002272_010 Hb_029243_010--Hb_002272_010 Hb_133661_010--Hb_001584_030 Hb_001355_120 Hb_001355_120 Hb_133661_010--Hb_001355_120 Hb_133661_010--Hb_118094_010 Hb_133661_010--Hb_000603_010 Hb_133661_010--Hb_002157_090 Hb_000261_170 Hb_000261_170 Hb_133661_010--Hb_000261_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0336171 0.584367 0 0.833148 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.430948 0.387296 0 0.039101 0

CAGE analysis