Hb_005045_060

Information

Type -
Description -
Location Contig5045: 31446-32962
Sequence    

Annotation

kegg
ID rcu:RCOM_0922250
description hypothetical protein
nr
ID XP_012076459.1
description PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
swissprot
ID Q8W487
description Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795 PE=2 SV=1
trembl
ID A0A067KBL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07108 PE=4 SV=1
Gene Ontology
ID GO:0005759
description mitochondrial glycoprotein family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45962: 31651-32347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005045_060 0.0 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
2 Hb_001341_090 0.0657248129 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
3 Hb_004032_010 0.0662531785 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
4 Hb_000815_320 0.0732756711 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
5 Hb_024071_020 0.074038562 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
6 Hb_001489_060 0.0762472063 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
7 Hb_002811_260 0.0777147806 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
8 Hb_001817_090 0.079025429 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
9 Hb_000172_320 0.0810103486 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
10 Hb_000690_180 0.081425947 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Jatropha curcas]
11 Hb_002864_050 0.0826571306 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
12 Hb_002226_070 0.0831359598 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
13 Hb_134949_020 0.0848981845 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
14 Hb_004108_070 0.0884010132 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
15 Hb_005731_050 0.0887880384 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
16 Hb_011344_210 0.0888192048 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
17 Hb_000610_050 0.0888666063 - - skp1, putative [Ricinus communis]
18 Hb_165132_010 0.0900640016 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
19 Hb_128048_010 0.0901782433 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
20 Hb_021419_020 0.0903007488 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005045_060 Hb_005045_060 Hb_001341_090 Hb_001341_090 Hb_005045_060--Hb_001341_090 Hb_004032_010 Hb_004032_010 Hb_005045_060--Hb_004032_010 Hb_000815_320 Hb_000815_320 Hb_005045_060--Hb_000815_320 Hb_024071_020 Hb_024071_020 Hb_005045_060--Hb_024071_020 Hb_001489_060 Hb_001489_060 Hb_005045_060--Hb_001489_060 Hb_002811_260 Hb_002811_260 Hb_005045_060--Hb_002811_260 Hb_134949_020 Hb_134949_020 Hb_001341_090--Hb_134949_020 Hb_000996_140 Hb_000996_140 Hb_001341_090--Hb_000996_140 Hb_002864_050 Hb_002864_050 Hb_001341_090--Hb_002864_050 Hb_000527_060 Hb_000527_060 Hb_001341_090--Hb_000527_060 Hb_002343_060 Hb_002343_060 Hb_001341_090--Hb_002343_060 Hb_002226_070 Hb_002226_070 Hb_004032_010--Hb_002226_070 Hb_000656_170 Hb_000656_170 Hb_004032_010--Hb_000656_170 Hb_033834_040 Hb_033834_040 Hb_004032_010--Hb_033834_040 Hb_000690_180 Hb_000690_180 Hb_004032_010--Hb_000690_180 Hb_003108_020 Hb_003108_020 Hb_004032_010--Hb_003108_020 Hb_001821_010 Hb_001821_010 Hb_000815_320--Hb_001821_010 Hb_001662_070 Hb_001662_070 Hb_000815_320--Hb_001662_070 Hb_001195_480 Hb_001195_480 Hb_000815_320--Hb_001195_480 Hb_000580_090 Hb_000580_090 Hb_000815_320--Hb_000580_090 Hb_004116_190 Hb_004116_190 Hb_000815_320--Hb_004116_190 Hb_005054_060 Hb_005054_060 Hb_000815_320--Hb_005054_060 Hb_001140_370 Hb_001140_370 Hb_024071_020--Hb_001140_370 Hb_000610_050 Hb_000610_050 Hb_024071_020--Hb_000610_050 Hb_003126_050 Hb_003126_050 Hb_024071_020--Hb_003126_050 Hb_000020_060 Hb_000020_060 Hb_024071_020--Hb_000020_060 Hb_000059_330 Hb_000059_330 Hb_024071_020--Hb_000059_330 Hb_003428_030 Hb_003428_030 Hb_024071_020--Hb_003428_030 Hb_063716_050 Hb_063716_050 Hb_001489_060--Hb_063716_050 Hb_003050_080 Hb_003050_080 Hb_001489_060--Hb_003050_080 Hb_001489_060--Hb_002226_070 Hb_002006_020 Hb_002006_020 Hb_001489_060--Hb_002006_020 Hb_001489_060--Hb_001821_010 Hb_000056_200 Hb_000056_200 Hb_001489_060--Hb_000056_200 Hb_021419_020 Hb_021419_020 Hb_002811_260--Hb_021419_020 Hb_128048_010 Hb_128048_010 Hb_002811_260--Hb_128048_010 Hb_005773_060 Hb_005773_060 Hb_002811_260--Hb_005773_060 Hb_002811_260--Hb_001195_480 Hb_001328_040 Hb_001328_040 Hb_002811_260--Hb_001328_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.16825 2.66112 4.81557 6.50436 6.68389 6.5232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.17005 14.0137 6.13508 3.68693 2.2356

CAGE analysis