Hb_005045_070

Information

Type -
Description -
Location Contig5045: 34670-37098
Sequence    

Annotation

kegg
ID rcu:RCOM_0922270
description hypothetical protein
nr
ID XP_012076460.1
description PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
swissprot
ID Q93VG8
description DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1
trembl
ID A0A067KEU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07109 PE=4 SV=1
Gene Ontology
ID GO:0005886
description desi-like protein at4g17486

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45963: 34696-37091
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005045_070 0.0 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
2 Hb_002324_010 0.0708407434 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
3 Hb_001172_100 0.0843889493 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
4 Hb_072922_020 0.0919607234 - - SNARE-like superfamily protein [Theobroma cacao]
5 Hb_006452_040 0.0976795756 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
6 Hb_000087_130 0.0978633383 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
7 Hb_003376_190 0.0993532882 - - syntaxin, putative [Ricinus communis]
8 Hb_000049_050 0.1036041347 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
9 Hb_000836_010 0.1067555954 - - beta-cyanoalanine synthase [Hevea brasiliensis]
10 Hb_000042_200 0.1068585149 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
11 Hb_138585_040 0.1074383241 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
12 Hb_005463_140 0.1076999626 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
13 Hb_000302_280 0.1082058079 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
14 Hb_001155_040 0.1094122914 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
15 Hb_000384_120 0.1098280464 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
16 Hb_003018_050 0.1100356543 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
17 Hb_000107_300 0.1118142041 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
18 Hb_001284_030 0.1133253265 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
19 Hb_000215_330 0.1147758524 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
20 Hb_001157_080 0.1148733657 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005045_070 Hb_005045_070 Hb_002324_010 Hb_002324_010 Hb_005045_070--Hb_002324_010 Hb_001172_100 Hb_001172_100 Hb_005045_070--Hb_001172_100 Hb_072922_020 Hb_072922_020 Hb_005045_070--Hb_072922_020 Hb_006452_040 Hb_006452_040 Hb_005045_070--Hb_006452_040 Hb_000087_130 Hb_000087_130 Hb_005045_070--Hb_000087_130 Hb_003376_190 Hb_003376_190 Hb_005045_070--Hb_003376_190 Hb_002324_010--Hb_003376_190 Hb_000384_120 Hb_000384_120 Hb_002324_010--Hb_000384_120 Hb_002324_010--Hb_001172_100 Hb_002324_010--Hb_072922_020 Hb_138585_040 Hb_138585_040 Hb_002324_010--Hb_138585_040 Hb_001172_100--Hb_138585_040 Hb_001172_100--Hb_000384_120 Hb_001225_010 Hb_001225_010 Hb_001172_100--Hb_001225_010 Hb_001157_080 Hb_001157_080 Hb_001172_100--Hb_001157_080 Hb_005463_140 Hb_005463_140 Hb_072922_020--Hb_005463_140 Hb_072922_020--Hb_000384_120 Hb_072922_020--Hb_000087_130 Hb_000302_280 Hb_000302_280 Hb_072922_020--Hb_000302_280 Hb_000254_050 Hb_000254_050 Hb_072922_020--Hb_000254_050 Hb_000789_230 Hb_000789_230 Hb_072922_020--Hb_000789_230 Hb_003018_050 Hb_003018_050 Hb_006452_040--Hb_003018_050 Hb_002631_020 Hb_002631_020 Hb_006452_040--Hb_002631_020 Hb_001155_040 Hb_001155_040 Hb_006452_040--Hb_001155_040 Hb_007317_160 Hb_007317_160 Hb_006452_040--Hb_007317_160 Hb_001221_310 Hb_001221_310 Hb_006452_040--Hb_001221_310 Hb_006452_040--Hb_005463_140 Hb_000087_130--Hb_001155_040 Hb_006915_040 Hb_006915_040 Hb_000087_130--Hb_006915_040 Hb_000948_220 Hb_000948_220 Hb_000087_130--Hb_000948_220 Hb_000030_200 Hb_000030_200 Hb_000087_130--Hb_000030_200 Hb_000087_130--Hb_000384_120 Hb_000107_300 Hb_000107_300 Hb_003376_190--Hb_000107_300 Hb_000215_330 Hb_000215_330 Hb_003376_190--Hb_000215_330 Hb_005235_030 Hb_005235_030 Hb_003376_190--Hb_005235_030 Hb_005269_080 Hb_005269_080 Hb_003376_190--Hb_005269_080 Hb_003376_190--Hb_006915_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2549 4.05823 4.78026 30.0124 5.56501 9.86887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.072 56.4832 23.867 10.832 11.6835

CAGE analysis