Hb_005048_020

Information

Type -
Description -
Location Contig5048: 18057-22833
Sequence    

Annotation

kegg
ID tcc:TCM_018243
description DNA/RNA polymerases superfamily protein
nr
ID XP_007032152.1
description Retrotransposon protein, putative [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061EEM4
description Retrotransposon protein, putative OS=Theobroma cacao GN=TCM_017511 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005048_020 0.0 - - Retrotransposon protein, putative [Theobroma cacao]
2 Hb_002918_180 0.180341503 - - hypothetical protein POPTR_0004s04740g [Populus trichocarpa]
3 Hb_001473_040 0.182292003 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_000538_030 0.1949188051 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_000258_380 0.19937132 - - PREDICTED: F-box/kelch-repeat protein SKIP11-like [Jatropha curcas]
6 Hb_004200_020 0.2012157997 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
7 Hb_001621_070 0.202376927 - - hypothetical protein POPTR_0008s05890g [Populus trichocarpa]
8 Hb_141990_040 0.2029971368 - - Protein SCAR2, putative [Ricinus communis]
9 Hb_012573_040 0.2044943543 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
10 Hb_003605_240 0.2090409339 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
11 Hb_003055_140 0.210041243 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
12 Hb_004032_420 0.2121964908 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
13 Hb_000024_010 0.2123511335 - - Uncharacterized protein TCM_044274 [Theobroma cacao]
14 Hb_003929_130 0.2140458481 - - PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas]
15 Hb_003728_040 0.2160401815 - - PREDICTED: uncharacterized protein LOC101492305 [Cicer arietinum]
16 Hb_000226_080 0.2230318019 - - prephenate dehydrogenase, putative [Ricinus communis]
17 Hb_001369_570 0.2249521277 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
18 Hb_025708_020 0.2275611221 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_001794_060 0.2289745056 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000634_070 0.2306738623 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]

Gene co-expression network

sample Hb_005048_020 Hb_005048_020 Hb_002918_180 Hb_002918_180 Hb_005048_020--Hb_002918_180 Hb_001473_040 Hb_001473_040 Hb_005048_020--Hb_001473_040 Hb_000538_030 Hb_000538_030 Hb_005048_020--Hb_000538_030 Hb_000258_380 Hb_000258_380 Hb_005048_020--Hb_000258_380 Hb_004200_020 Hb_004200_020 Hb_005048_020--Hb_004200_020 Hb_001621_070 Hb_001621_070 Hb_005048_020--Hb_001621_070 Hb_002235_040 Hb_002235_040 Hb_002918_180--Hb_002235_040 Hb_002316_150 Hb_002316_150 Hb_002918_180--Hb_002316_150 Hb_000866_120 Hb_000866_120 Hb_002918_180--Hb_000866_120 Hb_029142_050 Hb_029142_050 Hb_002918_180--Hb_029142_050 Hb_001999_090 Hb_001999_090 Hb_002918_180--Hb_001999_090 Hb_022250_090 Hb_022250_090 Hb_002918_180--Hb_022250_090 Hb_003929_130 Hb_003929_130 Hb_001473_040--Hb_003929_130 Hb_005188_020 Hb_005188_020 Hb_001473_040--Hb_005188_020 Hb_001825_060 Hb_001825_060 Hb_001473_040--Hb_001825_060 Hb_000230_500 Hb_000230_500 Hb_001473_040--Hb_000230_500 Hb_012573_040 Hb_012573_040 Hb_001473_040--Hb_012573_040 Hb_002217_020 Hb_002217_020 Hb_001473_040--Hb_002217_020 Hb_001856_200 Hb_001856_200 Hb_000538_030--Hb_001856_200 Hb_000432_090 Hb_000432_090 Hb_000538_030--Hb_000432_090 Hb_003605_240 Hb_003605_240 Hb_000538_030--Hb_003605_240 Hb_141990_040 Hb_141990_040 Hb_000538_030--Hb_141990_040 Hb_002849_140 Hb_002849_140 Hb_000538_030--Hb_002849_140 Hb_006909_060 Hb_006909_060 Hb_000538_030--Hb_006909_060 Hb_003078_050 Hb_003078_050 Hb_000258_380--Hb_003078_050 Hb_000056_170 Hb_000056_170 Hb_000258_380--Hb_000056_170 Hb_000634_070 Hb_000634_070 Hb_000258_380--Hb_000634_070 Hb_003097_100 Hb_003097_100 Hb_000258_380--Hb_003097_100 Hb_010921_030 Hb_010921_030 Hb_000258_380--Hb_010921_030 Hb_001525_010 Hb_001525_010 Hb_000258_380--Hb_001525_010 Hb_004200_020--Hb_022250_090 Hb_000213_100 Hb_000213_100 Hb_004200_020--Hb_000213_100 Hb_004200_020--Hb_002918_180 Hb_002577_010 Hb_002577_010 Hb_004200_020--Hb_002577_010 Hb_002218_010 Hb_002218_010 Hb_004200_020--Hb_002218_010 Hb_000680_050 Hb_000680_050 Hb_004200_020--Hb_000680_050 Hb_031862_040 Hb_031862_040 Hb_001621_070--Hb_031862_040 Hb_004032_420 Hb_004032_420 Hb_001621_070--Hb_004032_420 Hb_003609_020 Hb_003609_020 Hb_001621_070--Hb_003609_020 Hb_001004_110 Hb_001004_110 Hb_001621_070--Hb_001004_110 Hb_008066_070 Hb_008066_070 Hb_001621_070--Hb_008066_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0530656 0.222086 0.0327082 0.0123297 0.00815447 0.0196306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0296069 0.0854334 0.149323 0.0615011 0.066651

CAGE analysis