Hb_005048_050

Information

Type -
Description -
Location Contig5048: 31954-35034
Sequence    

Annotation

kegg
ID rcu:RCOM_1062920
description Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative (EC:1.6.5.3)
nr
ID XP_002521423.1
description Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
swissprot
ID O80874
description Internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial OS=Arabidopsis thaliana GN=NDA2 PE=2 SV=1
trembl
ID B9S604
description Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial, putative OS=Ricinus communis GN=RCOM_1062920 PE=4 SV=1
Gene Ontology
ID GO:0016491
description internal alternative nad h-ubiquinone oxidoreductase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005048_050 0.0 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
2 Hb_000975_330 0.1812911377 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
3 Hb_001113_030 0.192117119 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
4 Hb_065500_040 0.2025443656 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000111_300 0.2126720315 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
6 Hb_000672_150 0.2129450632 - - Patatin T5 precursor, putative [Ricinus communis]
7 Hb_002301_200 0.2136272307 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
8 Hb_000072_330 0.2153396721 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001472_130 0.2205799064 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
10 Hb_000275_070 0.2256635871 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
11 Hb_000638_210 0.2283172828 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
12 Hb_001825_020 0.2295746105 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_003086_050 0.2329786099 - - calcium-dependent protein kinase, putative [Ricinus communis]
14 Hb_001902_150 0.2377257285 - - PREDICTED: cytokinin hydroxylase-like [Jatropha curcas]
15 Hb_002217_440 0.2406499859 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_013057_030 0.2480808021 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000152_860 0.2483104768 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_000042_250 0.2490808214 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
19 Hb_007218_140 0.249420796 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
20 Hb_000574_120 0.2515927987 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005048_050 Hb_005048_050 Hb_000975_330 Hb_000975_330 Hb_005048_050--Hb_000975_330 Hb_001113_030 Hb_001113_030 Hb_005048_050--Hb_001113_030 Hb_065500_040 Hb_065500_040 Hb_005048_050--Hb_065500_040 Hb_000111_300 Hb_000111_300 Hb_005048_050--Hb_000111_300 Hb_000672_150 Hb_000672_150 Hb_005048_050--Hb_000672_150 Hb_002301_200 Hb_002301_200 Hb_005048_050--Hb_002301_200 Hb_000975_330--Hb_065500_040 Hb_000072_330 Hb_000072_330 Hb_000975_330--Hb_000072_330 Hb_004324_290 Hb_004324_290 Hb_000975_330--Hb_004324_290 Hb_000574_120 Hb_000574_120 Hb_000975_330--Hb_000574_120 Hb_000009_310 Hb_000009_310 Hb_000975_330--Hb_000009_310 Hb_124315_030 Hb_124315_030 Hb_001113_030--Hb_124315_030 Hb_000111_480 Hb_000111_480 Hb_001113_030--Hb_000111_480 Hb_001113_030--Hb_000672_150 Hb_008173_030 Hb_008173_030 Hb_001113_030--Hb_008173_030 Hb_001959_120 Hb_001959_120 Hb_001113_030--Hb_001959_120 Hb_089032_010 Hb_089032_010 Hb_001113_030--Hb_089032_010 Hb_007218_140 Hb_007218_140 Hb_065500_040--Hb_007218_140 Hb_065500_040--Hb_000072_330 Hb_065500_040--Hb_002301_200 Hb_065500_040--Hb_000009_310 Hb_000111_300--Hb_002301_200 Hb_000417_290 Hb_000417_290 Hb_000111_300--Hb_000417_290 Hb_001863_100 Hb_001863_100 Hb_000111_300--Hb_001863_100 Hb_038758_010 Hb_038758_010 Hb_000111_300--Hb_038758_010 Hb_002217_440 Hb_002217_440 Hb_000111_300--Hb_002217_440 Hb_008616_060 Hb_008616_060 Hb_000111_300--Hb_008616_060 Hb_000672_150--Hb_001959_120 Hb_168707_040 Hb_168707_040 Hb_000672_150--Hb_168707_040 Hb_001472_130 Hb_001472_130 Hb_000672_150--Hb_001472_130 Hb_000671_170 Hb_000671_170 Hb_000672_150--Hb_000671_170 Hb_000672_150--Hb_008173_030 Hb_002284_020 Hb_002284_020 Hb_002301_200--Hb_002284_020 Hb_143629_030 Hb_143629_030 Hb_002301_200--Hb_143629_030 Hb_002301_200--Hb_000574_120 Hb_002301_200--Hb_000975_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0107222 20.5372 0.779174 1.66804 0.0100385 0.0405869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14588 3.01168 2.79553 3.66575 0.525899

CAGE analysis