Hb_005048_090

Information

Type -
Description -
Location Contig5048: 56493-56945
Sequence    

Annotation

kegg
ID rcu:RCOM_1062760
description nucleic acid binding protein, putative
nr
ID XP_012091528.1
description PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JDR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21379 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45975: 56449-57158
cDNA
(Sanger)
(ID:Location)		 012_N17.ab1: 56458-57052 , 018_L11.ab1: 56458-57052 , 021_E23.ab1: 56458-57052 , 032_P14.ab1: 56458-57052 , 043_B03.ab1: 56458-57052 , 049_D13.ab1: 56459-57052

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005048_090 0.0 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
2 Hb_000984_110 0.0834939511 - - hypothetical protein JCGZ_15953 [Jatropha curcas]
3 Hb_000230_550 0.0854639291 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
4 Hb_010267_030 0.0860799591 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
5 Hb_001295_050 0.0889409078 - - PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]
6 Hb_000172_070 0.0909831172 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
7 Hb_002170_010 0.0958893194 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
8 Hb_003145_030 0.1029861278 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000974_030 0.1069249646 - - PREDICTED: uncharacterized protein LOC105128463 isoform X1 [Populus euphratica]
10 Hb_005618_010 0.1247180198 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
11 Hb_000181_390 0.1349991683 - - unknown [Lotus japonicus]
12 Hb_112145_010 0.1362230922 - - kinase, putative [Ricinus communis]
13 Hb_000201_070 0.1376923092 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
14 Hb_004102_200 0.1379421906 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
15 Hb_061783_010 0.140718054 - - PREDICTED: uncharacterized protein LOC105124983 isoform X4 [Populus euphratica]
16 Hb_004450_090 0.1450212283 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
17 Hb_001907_050 0.1470566128 - - Receptor like protein 6, putative [Theobroma cacao]
18 Hb_002250_140 0.1482766619 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
19 Hb_020301_010 0.1489779473 - - cytochrome P450, putative [Ricinus communis]
20 Hb_001318_230 0.1504137754 - - Boron transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_005048_090 Hb_005048_090 Hb_000984_110 Hb_000984_110 Hb_005048_090--Hb_000984_110 Hb_000230_550 Hb_000230_550 Hb_005048_090--Hb_000230_550 Hb_010267_030 Hb_010267_030 Hb_005048_090--Hb_010267_030 Hb_001295_050 Hb_001295_050 Hb_005048_090--Hb_001295_050 Hb_000172_070 Hb_000172_070 Hb_005048_090--Hb_000172_070 Hb_002170_010 Hb_002170_010 Hb_005048_090--Hb_002170_010 Hb_061783_010 Hb_061783_010 Hb_000984_110--Hb_061783_010 Hb_000984_110--Hb_000230_550 Hb_000984_110--Hb_001295_050 Hb_000984_110--Hb_000172_070 Hb_004102_200 Hb_004102_200 Hb_000984_110--Hb_004102_200 Hb_000230_550--Hb_002170_010 Hb_000230_550--Hb_000172_070 Hb_000230_550--Hb_010267_030 Hb_003145_030 Hb_003145_030 Hb_000230_550--Hb_003145_030 Hb_000201_070 Hb_000201_070 Hb_010267_030--Hb_000201_070 Hb_010267_030--Hb_000172_070 Hb_005618_010 Hb_005618_010 Hb_010267_030--Hb_005618_010 Hb_010267_030--Hb_002170_010 Hb_112145_010 Hb_112145_010 Hb_010267_030--Hb_112145_010 Hb_020301_010 Hb_020301_010 Hb_001295_050--Hb_020301_010 Hb_001295_050--Hb_003145_030 Hb_001295_050--Hb_010267_030 Hb_001295_050--Hb_000172_070 Hb_000172_070--Hb_005618_010 Hb_007292_050 Hb_007292_050 Hb_000172_070--Hb_007292_050 Hb_000172_070--Hb_002170_010 Hb_128216_010 Hb_128216_010 Hb_002170_010--Hb_128216_010 Hb_002170_010--Hb_112145_010 Hb_006951_010 Hb_006951_010 Hb_002170_010--Hb_006951_010 Hb_002534_070 Hb_002534_070 Hb_002170_010--Hb_002534_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 39.8774 5.7767 49.7218 0.0634725 0.121703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.418921 17.2838

CAGE analysis