Hb_005048_110

Information

Type -
Description -
Location Contig5048: 101483-102044
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005048_110 0.0 - - -
2 Hb_126648_010 0.1890123356 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
3 Hb_002321_040 0.191368498 - - hypothetical protein POPTR_0019s14030g [Populus trichocarpa]
4 Hb_011609_040 0.2108159497 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
5 Hb_001329_170 0.2122716157 - - Chlorophyll a-b binding protein, chloroplastic [Aegilops tauschii]
6 Hb_001329_190 0.2178526691 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
7 Hb_002397_060 0.2197061517 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009620_090 0.2304286779 - - hypothetical protein L484_000980 [Morus notabilis]
9 Hb_000640_050 0.233890371 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
10 Hb_000320_050 0.2361800229 - - bcr-associated protein, bap, putative [Ricinus communis]
11 Hb_013834_010 0.2432319401 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
12 Hb_001454_070 0.2440895992 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
13 Hb_001135_110 0.2506053055 - - -
14 Hb_158384_010 0.2512456686 - - poly(A) polymerase, putative [Ricinus communis]
15 Hb_021495_010 0.2512768472 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000438_090 0.2527469315 - - PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
17 Hb_000345_410 0.2549196302 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
18 Hb_010998_050 0.2594873521 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
19 Hb_008994_010 0.2603117394 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
20 Hb_001195_120 0.261794038 - - oxidoreductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005048_110 Hb_005048_110 Hb_126648_010 Hb_126648_010 Hb_005048_110--Hb_126648_010 Hb_002321_040 Hb_002321_040 Hb_005048_110--Hb_002321_040 Hb_011609_040 Hb_011609_040 Hb_005048_110--Hb_011609_040 Hb_001329_170 Hb_001329_170 Hb_005048_110--Hb_001329_170 Hb_001329_190 Hb_001329_190 Hb_005048_110--Hb_001329_190 Hb_002397_060 Hb_002397_060 Hb_005048_110--Hb_002397_060 Hb_126648_010--Hb_002321_040 Hb_126648_010--Hb_011609_040 Hb_013834_010 Hb_013834_010 Hb_126648_010--Hb_013834_010 Hb_002325_030 Hb_002325_030 Hb_126648_010--Hb_002325_030 Hb_000692_210 Hb_000692_210 Hb_126648_010--Hb_000692_210 Hb_002321_040--Hb_011609_040 Hb_002321_040--Hb_013834_010 Hb_000640_050 Hb_000640_050 Hb_002321_040--Hb_000640_050 Hb_000320_050 Hb_000320_050 Hb_002321_040--Hb_000320_050 Hb_011609_040--Hb_013834_010 Hb_000959_190 Hb_000959_190 Hb_011609_040--Hb_000959_190 Hb_002600_130 Hb_002600_130 Hb_011609_040--Hb_002600_130 Hb_011609_040--Hb_000640_050 Hb_001329_170--Hb_002321_040 Hb_001329_170--Hb_002397_060 Hb_000111_400 Hb_000111_400 Hb_001329_170--Hb_000111_400 Hb_009620_090 Hb_009620_090 Hb_001329_170--Hb_009620_090 Hb_001329_170--Hb_126648_010 Hb_004162_230 Hb_004162_230 Hb_001329_190--Hb_004162_230 Hb_157022_030 Hb_157022_030 Hb_001329_190--Hb_157022_030 Hb_000739_270 Hb_000739_270 Hb_001329_190--Hb_000739_270 Hb_010488_040 Hb_010488_040 Hb_001329_190--Hb_010488_040 Hb_001329_190--Hb_011609_040 Hb_001329_190--Hb_013834_010 Hb_002397_060--Hb_009620_090 Hb_002397_060--Hb_004162_230 Hb_000556_130 Hb_000556_130 Hb_002397_060--Hb_000556_130 Hb_000544_030 Hb_000544_030 Hb_002397_060--Hb_000544_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.3891 0.349664 3.67334 1.54098 0.820323 0.415917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.306638 0.602165 0 0.151452 0

CAGE analysis