Hb_005048_120

Information

Type -
Description -
Location Contig5048: 112552-115215
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016021
description secretory carrier-associated membrane

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45981: 115043-115446
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005048_120 0.0 - - -
2 Hb_002936_030 0.0924598488 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
3 Hb_012272_010 0.1060847719 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_010721_010 0.1259763662 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
5 Hb_001247_160 0.1317017983 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
6 Hb_094437_050 0.1350282956 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
7 Hb_007904_290 0.1354592131 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
8 Hb_001019_020 0.1388345754 - - conserved hypothetical protein [Ricinus communis]
9 Hb_033327_010 0.1415224068 - - SYM8 [Pisum sativum]
10 Hb_005282_010 0.1482001551 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
11 Hb_001430_010 0.1493504407 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Jatropha curcas]
12 Hb_003633_150 0.1505400292 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
13 Hb_173271_010 0.1521410528 - - Disease resistance protein RPP13, putative [Ricinus communis]
14 Hb_001628_020 0.1523927925 - - receptor serine/threonine kinase, putative [Ricinus communis]
15 Hb_002048_070 0.1525449304 - - hypothetical protein JCGZ_15146 [Jatropha curcas]
16 Hb_000594_110 0.1528986798 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
17 Hb_000284_170 0.1531843158 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
18 Hb_002233_080 0.1540152094 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
19 Hb_007574_050 0.1540379423 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
20 Hb_001894_060 0.1545713758 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]

Gene co-expression network

sample Hb_005048_120 Hb_005048_120 Hb_002936_030 Hb_002936_030 Hb_005048_120--Hb_002936_030 Hb_012272_010 Hb_012272_010 Hb_005048_120--Hb_012272_010 Hb_010721_010 Hb_010721_010 Hb_005048_120--Hb_010721_010 Hb_001247_160 Hb_001247_160 Hb_005048_120--Hb_001247_160 Hb_094437_050 Hb_094437_050 Hb_005048_120--Hb_094437_050 Hb_007904_290 Hb_007904_290 Hb_005048_120--Hb_007904_290 Hb_002936_030--Hb_001247_160 Hb_007574_050 Hb_007574_050 Hb_002936_030--Hb_007574_050 Hb_005282_010 Hb_005282_010 Hb_002936_030--Hb_005282_010 Hb_003078_070 Hb_003078_070 Hb_002936_030--Hb_003078_070 Hb_002936_030--Hb_012272_010 Hb_012272_010--Hb_010721_010 Hb_012272_010--Hb_007904_290 Hb_001019_020 Hb_001019_020 Hb_012272_010--Hb_001019_020 Hb_001189_150 Hb_001189_150 Hb_012272_010--Hb_001189_150 Hb_023386_060 Hb_023386_060 Hb_010721_010--Hb_023386_060 Hb_002048_070 Hb_002048_070 Hb_010721_010--Hb_002048_070 Hb_001430_010 Hb_001430_010 Hb_010721_010--Hb_001430_010 Hb_002676_110 Hb_002676_110 Hb_010721_010--Hb_002676_110 Hb_011915_020 Hb_011915_020 Hb_010721_010--Hb_011915_020 Hb_001663_090 Hb_001663_090 Hb_010721_010--Hb_001663_090 Hb_003633_150 Hb_003633_150 Hb_001247_160--Hb_003633_150 Hb_000985_140 Hb_000985_140 Hb_001247_160--Hb_000985_140 Hb_021254_020 Hb_021254_020 Hb_001247_160--Hb_021254_020 Hb_001247_160--Hb_001019_020 Hb_001247_160--Hb_003078_070 Hb_002498_250 Hb_002498_250 Hb_094437_050--Hb_002498_250 Hb_094437_050--Hb_001019_020 Hb_000892_030 Hb_000892_030 Hb_094437_050--Hb_000892_030 Hb_005725_280 Hb_005725_280 Hb_094437_050--Hb_005725_280 Hb_002400_040 Hb_002400_040 Hb_094437_050--Hb_002400_040 Hb_000047_010 Hb_000047_010 Hb_094437_050--Hb_000047_010 Hb_002014_050 Hb_002014_050 Hb_007904_290--Hb_002014_050 Hb_007904_290--Hb_001430_010 Hb_000071_090 Hb_000071_090 Hb_007904_290--Hb_000071_090 Hb_001627_010 Hb_001627_010 Hb_007904_290--Hb_001627_010 Hb_004970_070 Hb_004970_070 Hb_007904_290--Hb_004970_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.326597 8.75686 6.36383 6.09247 0.0321899 0.297351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.158347 0.435701 0 0.708623 0.86336

CAGE analysis