Hb_005048_130

Information

Type -
Description -
Location Contig5048: 115638-122816
Sequence    

Annotation

kegg
ID pop:POPTR_0004s03700g
description POPTRDRAFT_1075082; hypothetical protein
nr
ID XP_002305670.2
description hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H244
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s03700g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45983: 122745-122950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005048_130 0.0 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
2 Hb_028285_010 0.0651612253 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
3 Hb_000062_070 0.0712114286 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
4 Hb_112798_020 0.0771049219 - - dnajc14 protein, putative [Ricinus communis]
5 Hb_001408_040 0.0774365592 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
6 Hb_010997_080 0.0793106364 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
7 Hb_000530_010 0.0809349207 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Jatropha curcas]
8 Hb_000796_210 0.0832523976 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000357_110 0.0838621139 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
10 Hb_000116_410 0.0850716261 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
11 Hb_010712_030 0.0880033226 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000191_150 0.0887274386 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
13 Hb_074715_010 0.0891054581 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
14 Hb_028962_020 0.0903411001 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
15 Hb_170487_020 0.0904346725 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
16 Hb_000099_080 0.0906878221 - - kinesin light chain, putative [Ricinus communis]
17 Hb_001635_090 0.091112846 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
18 Hb_003761_010 0.0918714591 - - alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_002205_110 0.0934598095 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000679_310 0.094101435 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005048_130 Hb_005048_130 Hb_028285_010 Hb_028285_010 Hb_005048_130--Hb_028285_010 Hb_000062_070 Hb_000062_070 Hb_005048_130--Hb_000062_070 Hb_112798_020 Hb_112798_020 Hb_005048_130--Hb_112798_020 Hb_001408_040 Hb_001408_040 Hb_005048_130--Hb_001408_040 Hb_010997_080 Hb_010997_080 Hb_005048_130--Hb_010997_080 Hb_000530_010 Hb_000530_010 Hb_005048_130--Hb_000530_010 Hb_028285_010--Hb_000062_070 Hb_000907_110 Hb_000907_110 Hb_028285_010--Hb_000907_110 Hb_003761_010 Hb_003761_010 Hb_028285_010--Hb_003761_010 Hb_028285_010--Hb_001408_040 Hb_014497_050 Hb_014497_050 Hb_028285_010--Hb_014497_050 Hb_002320_040 Hb_002320_040 Hb_000062_070--Hb_002320_040 Hb_000649_110 Hb_000649_110 Hb_000062_070--Hb_000649_110 Hb_005365_030 Hb_005365_030 Hb_000062_070--Hb_005365_030 Hb_034552_030 Hb_034552_030 Hb_000062_070--Hb_034552_030 Hb_002248_080 Hb_002248_080 Hb_112798_020--Hb_002248_080 Hb_004970_090 Hb_004970_090 Hb_112798_020--Hb_004970_090 Hb_017491_030 Hb_017491_030 Hb_112798_020--Hb_017491_030 Hb_000529_020 Hb_000529_020 Hb_112798_020--Hb_000529_020 Hb_000796_210 Hb_000796_210 Hb_112798_020--Hb_000796_210 Hb_000256_190 Hb_000256_190 Hb_112798_020--Hb_000256_190 Hb_001635_090 Hb_001635_090 Hb_001408_040--Hb_001635_090 Hb_001248_060 Hb_001248_060 Hb_001408_040--Hb_001248_060 Hb_000484_030 Hb_000484_030 Hb_001408_040--Hb_000484_030 Hb_002205_110 Hb_002205_110 Hb_001408_040--Hb_002205_110 Hb_002028_210 Hb_002028_210 Hb_001408_040--Hb_002028_210 Hb_010381_090 Hb_010381_090 Hb_001408_040--Hb_010381_090 Hb_010997_080--Hb_002205_110 Hb_000441_140 Hb_000441_140 Hb_010997_080--Hb_000441_140 Hb_000028_370 Hb_000028_370 Hb_010997_080--Hb_000028_370 Hb_000173_490 Hb_000173_490 Hb_010997_080--Hb_000173_490 Hb_003389_040 Hb_003389_040 Hb_010997_080--Hb_003389_040 Hb_000530_010--Hb_000062_070 Hb_000191_150 Hb_000191_150 Hb_000530_010--Hb_000191_150 Hb_000116_410 Hb_000116_410 Hb_000530_010--Hb_000116_410 Hb_074715_010 Hb_074715_010 Hb_000530_010--Hb_074715_010 Hb_000530_010--Hb_112798_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.46981 10.1289 4.13854 8.19855 7.61222 7.95324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.64875 9.267 5.24941 7.59796 2.57006

CAGE analysis