Hb_005048_140

Information

Type -
Description -
Location Contig5048: 132219-135895
Sequence    

Annotation

kegg
ID rcu:RCOM_1062710
description hypothetical protein
nr
ID XP_002521413.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5Z4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1062710 PE=4 SV=1
Gene Ontology
ID GO:0005515
description bromodomain-containing 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45984: 132328-133339 , PASA_asmbl_45985: 133362-135627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005048_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000069_570 0.0896205807 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
3 Hb_116420_040 0.1170905811 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002471_180 0.1175759568 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_041327_020 0.1285774798 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000022_190 0.1350802682 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Jatropha curcas]
7 Hb_003376_260 0.135800258 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
8 Hb_098209_010 0.14059502 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
9 Hb_000376_060 0.1419056812 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
10 Hb_005271_160 0.1441839433 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
11 Hb_000347_560 0.1447312815 - - -
12 Hb_000820_150 0.1452760483 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
13 Hb_008014_040 0.146112271 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
14 Hb_004701_050 0.1462426234 - - alpha1 family protein [Populus trichocarpa]
15 Hb_001021_220 0.1462771338 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
16 Hb_000139_230 0.1464631309 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
17 Hb_001396_240 0.1468067967 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
18 Hb_001194_020 0.1477904592 - - microtubule associated protein xmap215, putative [Ricinus communis]
19 Hb_065525_130 0.1488514017 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
20 Hb_024698_010 0.1496169816 - - PREDICTED: RING-H2 finger protein ATL46 [Jatropha curcas]

Gene co-expression network

sample Hb_005048_140 Hb_005048_140 Hb_000069_570 Hb_000069_570 Hb_005048_140--Hb_000069_570 Hb_116420_040 Hb_116420_040 Hb_005048_140--Hb_116420_040 Hb_002471_180 Hb_002471_180 Hb_005048_140--Hb_002471_180 Hb_041327_020 Hb_041327_020 Hb_005048_140--Hb_041327_020 Hb_000022_190 Hb_000022_190 Hb_005048_140--Hb_000022_190 Hb_003376_260 Hb_003376_260 Hb_005048_140--Hb_003376_260 Hb_008014_040 Hb_008014_040 Hb_000069_570--Hb_008014_040 Hb_000069_570--Hb_000022_190 Hb_000069_570--Hb_116420_040 Hb_010315_020 Hb_010315_020 Hb_000069_570--Hb_010315_020 Hb_162275_040 Hb_162275_040 Hb_000069_570--Hb_162275_040 Hb_000608_260 Hb_000608_260 Hb_116420_040--Hb_000608_260 Hb_001349_030 Hb_001349_030 Hb_116420_040--Hb_001349_030 Hb_001194_020 Hb_001194_020 Hb_116420_040--Hb_001194_020 Hb_001059_130 Hb_001059_130 Hb_116420_040--Hb_001059_130 Hb_048476_150 Hb_048476_150 Hb_002471_180--Hb_048476_150 Hb_000139_230 Hb_000139_230 Hb_002471_180--Hb_000139_230 Hb_001021_220 Hb_001021_220 Hb_002471_180--Hb_001021_220 Hb_098209_010 Hb_098209_010 Hb_002471_180--Hb_098209_010 Hb_002902_020 Hb_002902_020 Hb_002471_180--Hb_002902_020 Hb_000376_060 Hb_000376_060 Hb_002471_180--Hb_000376_060 Hb_005496_050 Hb_005496_050 Hb_041327_020--Hb_005496_050 Hb_041327_020--Hb_098209_010 Hb_132840_110 Hb_132840_110 Hb_041327_020--Hb_132840_110 Hb_001619_050 Hb_001619_050 Hb_041327_020--Hb_001619_050 Hb_000320_470 Hb_000320_470 Hb_041327_020--Hb_000320_470 Hb_000445_140 Hb_000445_140 Hb_041327_020--Hb_000445_140 Hb_089246_010 Hb_089246_010 Hb_000022_190--Hb_089246_010 Hb_001018_090 Hb_001018_090 Hb_000022_190--Hb_001018_090 Hb_000022_190--Hb_008014_040 Hb_000103_340 Hb_000103_340 Hb_000022_190--Hb_000103_340 Hb_000635_090 Hb_000635_090 Hb_000022_190--Hb_000635_090 Hb_024698_010 Hb_024698_010 Hb_003376_260--Hb_024698_010 Hb_074197_020 Hb_074197_020 Hb_003376_260--Hb_074197_020 Hb_003376_260--Hb_116420_040 Hb_002301_310 Hb_002301_310 Hb_003376_260--Hb_002301_310 Hb_004657_090 Hb_004657_090 Hb_003376_260--Hb_004657_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.93786 7.42145 6.94968 7.03797 3.88202 9.72768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94571 1.36456 1.45382 2.02478 9.05341

CAGE analysis