Hb_005050_050

Information

Type -
Description -
Location Contig5050: 47920-61507
Sequence    

Annotation

kegg
ID gmx:100775699
description wall-associated receptor kinase 5-like
nr
ID XP_006596779.1
description PREDICTED: wall-associated receptor kinase 5-like [Glycine max]
swissprot
ID Q9LSV3
description Putative wall-associated receptor kinase-like 16 OS=Arabidopsis thaliana GN=WAKL16 PE=3 SV=1
trembl
ID V4U630
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004483mg PE=3 SV=1
Gene Ontology
ID GO:0004672
description wall-associated receptor kinase-like 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46027: 58381-58644 , PASA_asmbl_46029: 61116-61556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005050_050 0.0 - - PREDICTED: wall-associated receptor kinase 5-like [Glycine max]
2 Hb_007101_270 0.1148369044 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
3 Hb_003020_070 0.1345143853 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
4 Hb_001386_150 0.140234745 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
5 Hb_000212_270 0.141231265 - - calreticulin, putative [Ricinus communis]
6 Hb_002890_160 0.1425545961 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
7 Hb_010683_070 0.1497980097 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Jatropha curcas]
8 Hb_014068_010 0.1512247292 - - PREDICTED: phototropin-1 [Jatropha curcas]
9 Hb_126933_010 0.1554445297 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
10 Hb_001638_190 0.1567011893 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
11 Hb_000175_200 0.1588028009 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003119_130 0.1680568222 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
13 Hb_001898_100 0.1694814507 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
14 Hb_000697_020 0.1700896342 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
15 Hb_000538_250 0.1720155248 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 [Jatropha curcas]
16 Hb_001266_130 0.1720267905 - - PREDICTED: soluble inorganic pyrophosphatase-like [Jatropha curcas]
17 Hb_000062_050 0.1721970402 - - protein binding protein, putative [Ricinus communis]
18 Hb_005116_130 0.1736420532 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
19 Hb_000345_400 0.1744932407 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003453_060 0.1751655424 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005050_050 Hb_005050_050 Hb_007101_270 Hb_007101_270 Hb_005050_050--Hb_007101_270 Hb_003020_070 Hb_003020_070 Hb_005050_050--Hb_003020_070 Hb_001386_150 Hb_001386_150 Hb_005050_050--Hb_001386_150 Hb_000212_270 Hb_000212_270 Hb_005050_050--Hb_000212_270 Hb_002890_160 Hb_002890_160 Hb_005050_050--Hb_002890_160 Hb_010683_070 Hb_010683_070 Hb_005050_050--Hb_010683_070 Hb_007101_270--Hb_003020_070 Hb_007101_270--Hb_002890_160 Hb_007101_270--Hb_010683_070 Hb_006789_030 Hb_006789_030 Hb_007101_270--Hb_006789_030 Hb_005486_020 Hb_005486_020 Hb_007101_270--Hb_005486_020 Hb_003020_070--Hb_002890_160 Hb_014068_010 Hb_014068_010 Hb_003020_070--Hb_014068_010 Hb_003020_070--Hb_000212_270 Hb_003531_050 Hb_003531_050 Hb_003020_070--Hb_003531_050 Hb_001352_030 Hb_001352_030 Hb_003020_070--Hb_001352_030 Hb_001898_100 Hb_001898_100 Hb_003020_070--Hb_001898_100 Hb_126933_010 Hb_126933_010 Hb_001386_150--Hb_126933_010 Hb_010683_060 Hb_010683_060 Hb_001386_150--Hb_010683_060 Hb_001386_150--Hb_007101_270 Hb_002107_040 Hb_002107_040 Hb_001386_150--Hb_002107_040 Hb_005976_090 Hb_005976_090 Hb_001386_150--Hb_005976_090 Hb_008878_020 Hb_008878_020 Hb_000212_270--Hb_008878_020 Hb_000175_200 Hb_000175_200 Hb_000212_270--Hb_000175_200 Hb_000697_020 Hb_000697_020 Hb_000212_270--Hb_000697_020 Hb_000212_270--Hb_001898_100 Hb_001172_150 Hb_001172_150 Hb_000212_270--Hb_001172_150 Hb_003119_130 Hb_003119_130 Hb_000212_270--Hb_003119_130 Hb_002890_160--Hb_003531_050 Hb_002890_160--Hb_001352_030 Hb_010534_040 Hb_010534_040 Hb_002890_160--Hb_010534_040 Hb_000037_200 Hb_000037_200 Hb_002890_160--Hb_000037_200 Hb_000922_160 Hb_000922_160 Hb_002890_160--Hb_000922_160 Hb_004218_050 Hb_004218_050 Hb_010683_070--Hb_004218_050 Hb_004223_170 Hb_004223_170 Hb_010683_070--Hb_004223_170 Hb_001579_190 Hb_001579_190 Hb_010683_070--Hb_001579_190 Hb_007952_050 Hb_007952_050 Hb_010683_070--Hb_007952_050 Hb_010863_030 Hb_010863_030 Hb_010683_070--Hb_010863_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0878446 0.166223 0.959897 0.20886 0 0.0120749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0156742 0 0 0.151721 0.525595

CAGE analysis