Hb_005051_010

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig5051: 31444-34707
Sequence    

Annotation

kegg
ID rcu:RCOM_1315120
description transcription factor, putative
nr
ID XP_002518968.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q39117
description Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1
trembl
ID B9RYZ9
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1315120 PE=4 SV=1
Gene Ontology
ID GO:0005488
description trihelix transcription factor gtl1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46030: 31019-34869
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005051_010 0.0 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
2 Hb_001305_020 0.0623047738 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
3 Hb_000427_040 0.0624868654 - - Gibberellin receptor GID1, putative [Ricinus communis]
4 Hb_014700_030 0.0838755417 - - tryptophan synthase beta chain, putative [Ricinus communis]
5 Hb_032779_010 0.0859403465 - - unnamed protein product [Vitis vinifera]
6 Hb_000622_030 0.0869654125 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
7 Hb_000434_060 0.0897160142 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
8 Hb_002902_070 0.0904358899 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
9 Hb_031862_120 0.0990339365 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
10 Hb_000069_540 0.0996602302 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
11 Hb_010222_060 0.1023348854 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_001158_250 0.103310802 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001789_120 0.1052557251 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
14 Hb_001242_040 0.1064117765 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
15 Hb_005723_090 0.1076801438 - - conserved hypothetical protein [Ricinus communis]
16 Hb_143871_010 0.108794598 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
17 Hb_002168_070 0.1106368286 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
18 Hb_000120_480 0.1109526691 - - -
19 Hb_000834_100 0.1114518598 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]
20 Hb_009771_040 0.1121812743 - - hypothetical protein JCGZ_25039 [Jatropha curcas]

Gene co-expression network

sample Hb_005051_010 Hb_005051_010 Hb_001305_020 Hb_001305_020 Hb_005051_010--Hb_001305_020 Hb_000427_040 Hb_000427_040 Hb_005051_010--Hb_000427_040 Hb_014700_030 Hb_014700_030 Hb_005051_010--Hb_014700_030 Hb_032779_010 Hb_032779_010 Hb_005051_010--Hb_032779_010 Hb_000622_030 Hb_000622_030 Hb_005051_010--Hb_000622_030 Hb_000434_060 Hb_000434_060 Hb_005051_010--Hb_000434_060 Hb_001305_020--Hb_000622_030 Hb_002902_070 Hb_002902_070 Hb_001305_020--Hb_002902_070 Hb_005723_090 Hb_005723_090 Hb_001305_020--Hb_005723_090 Hb_001158_250 Hb_001158_250 Hb_001305_020--Hb_001158_250 Hb_000834_100 Hb_000834_100 Hb_001305_020--Hb_000834_100 Hb_000427_040--Hb_032779_010 Hb_000427_040--Hb_002902_070 Hb_000427_040--Hb_014700_030 Hb_000427_040--Hb_001305_020 Hb_000069_540 Hb_000069_540 Hb_000427_040--Hb_000069_540 Hb_001789_120 Hb_001789_120 Hb_014700_030--Hb_001789_120 Hb_004880_050 Hb_004880_050 Hb_014700_030--Hb_004880_050 Hb_010222_060 Hb_010222_060 Hb_014700_030--Hb_010222_060 Hb_014700_030--Hb_032779_010 Hb_013394_120 Hb_013394_120 Hb_014700_030--Hb_013394_120 Hb_132840_170 Hb_132840_170 Hb_014700_030--Hb_132840_170 Hb_032779_010--Hb_004880_050 Hb_032779_010--Hb_001789_120 Hb_032779_010--Hb_002902_070 Hb_000622_030--Hb_001158_250 Hb_000622_030--Hb_005723_090 Hb_000000_290 Hb_000000_290 Hb_000622_030--Hb_000000_290 Hb_001232_040 Hb_001232_040 Hb_000622_030--Hb_001232_040 Hb_005183_100 Hb_005183_100 Hb_000622_030--Hb_005183_100 Hb_002168_070 Hb_002168_070 Hb_000434_060--Hb_002168_070 Hb_005211_210 Hb_005211_210 Hb_000434_060--Hb_005211_210 Hb_002043_070 Hb_002043_070 Hb_000434_060--Hb_002043_070 Hb_009771_040 Hb_009771_040 Hb_000434_060--Hb_009771_040 Hb_007221_040 Hb_007221_040 Hb_000434_060--Hb_007221_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0365574 8.83149 5.72533 12.4655 0.00855524 0.0399741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.85093 13.9769

CAGE analysis