Hb_005051_020

Information

Type -
Description -
Location Contig5051: 45756-48158
Sequence    

Annotation

kegg
ID rcu:RCOM_1315230
description beta-1,3-n-acetylglucosaminyltransferase radical fringe, putative
nr
ID KDP25189.1
description hypothetical protein JCGZ_20345 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K083
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20345 PE=4 SV=1
Gene Ontology
ID GO:0016757
description fringe-related protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46031: 45663-48690 , PASA_asmbl_46032: 45663-48664
cDNA
(Sanger)
(ID:Location)		 014_D06.ab1: 47968-48690 , 014_K19.ab1: 47473-48664 , 020_N22.ab1: 47961-48690 , 023_F19.ab1: 48053-48690

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005051_020 0.0 - - hypothetical protein JCGZ_20345 [Jatropha curcas]
2 Hb_001766_080 0.0775803406 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
3 Hb_001473_160 0.0777135636 - - Vesicle-associated membrane protein, putative [Ricinus communis]
4 Hb_000406_140 0.0817210286 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000072_120 0.0851221041 - - serine/threonine protein kinase, putative [Ricinus communis]
6 Hb_003617_020 0.0864084768 - - PREDICTED: uncharacterized protein LOC105638179 [Jatropha curcas]
7 Hb_002754_010 0.0894656698 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
8 Hb_001679_050 0.0905311915 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
9 Hb_086639_010 0.0911282735 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_001377_490 0.0921173336 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
11 Hb_155159_020 0.0924754146 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
12 Hb_001377_260 0.0926072331 - - protein with unknown function [Ricinus communis]
13 Hb_000009_560 0.0930574277 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
14 Hb_006455_120 0.0933995688 - - n6-DNA-methyltransferase, putative [Ricinus communis]
15 Hb_000300_500 0.0941594786 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
16 Hb_000140_380 0.0943305371 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
17 Hb_001159_130 0.0944669843 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
18 Hb_002809_050 0.0955733583 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
19 Hb_000329_230 0.0970885886 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
20 Hb_000088_170 0.0982040932 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_005051_020 Hb_005051_020 Hb_001766_080 Hb_001766_080 Hb_005051_020--Hb_001766_080 Hb_001473_160 Hb_001473_160 Hb_005051_020--Hb_001473_160 Hb_000406_140 Hb_000406_140 Hb_005051_020--Hb_000406_140 Hb_000072_120 Hb_000072_120 Hb_005051_020--Hb_000072_120 Hb_003617_020 Hb_003617_020 Hb_005051_020--Hb_003617_020 Hb_002754_010 Hb_002754_010 Hb_005051_020--Hb_002754_010 Hb_001766_080--Hb_003617_020 Hb_004672_040 Hb_004672_040 Hb_001766_080--Hb_004672_040 Hb_001766_080--Hb_000072_120 Hb_005269_040 Hb_005269_040 Hb_001766_080--Hb_005269_040 Hb_000009_560 Hb_000009_560 Hb_001766_080--Hb_000009_560 Hb_001473_160--Hb_000072_120 Hb_000329_230 Hb_000329_230 Hb_001473_160--Hb_000329_230 Hb_000637_110 Hb_000637_110 Hb_001473_160--Hb_000637_110 Hb_002028_210 Hb_002028_210 Hb_001473_160--Hb_002028_210 Hb_003906_200 Hb_003906_200 Hb_001473_160--Hb_003906_200 Hb_093458_040 Hb_093458_040 Hb_001473_160--Hb_093458_040 Hb_000497_300 Hb_000497_300 Hb_000406_140--Hb_000497_300 Hb_164010_030 Hb_164010_030 Hb_000406_140--Hb_164010_030 Hb_001163_100 Hb_001163_100 Hb_000406_140--Hb_001163_100 Hb_012490_080 Hb_012490_080 Hb_000406_140--Hb_012490_080 Hb_001898_080 Hb_001898_080 Hb_000406_140--Hb_001898_080 Hb_000406_140--Hb_000009_560 Hb_000072_120--Hb_000329_230 Hb_000072_120--Hb_003906_200 Hb_001674_030 Hb_001674_030 Hb_000072_120--Hb_001674_030 Hb_004030_080 Hb_004030_080 Hb_000072_120--Hb_004030_080 Hb_001679_050 Hb_001679_050 Hb_000072_120--Hb_001679_050 Hb_003617_020--Hb_000329_230 Hb_001357_040 Hb_001357_040 Hb_003617_020--Hb_001357_040 Hb_012395_170 Hb_012395_170 Hb_003617_020--Hb_012395_170 Hb_005276_060 Hb_005276_060 Hb_003617_020--Hb_005276_060 Hb_000322_070 Hb_000322_070 Hb_003617_020--Hb_000322_070 Hb_003617_020--Hb_000072_120 Hb_164010_040 Hb_164010_040 Hb_002754_010--Hb_164010_040 Hb_000331_550 Hb_000331_550 Hb_002754_010--Hb_000331_550 Hb_000926_090 Hb_000926_090 Hb_002754_010--Hb_000926_090 Hb_065525_040 Hb_065525_040 Hb_002754_010--Hb_065525_040 Hb_013358_040 Hb_013358_040 Hb_002754_010--Hb_013358_040 Hb_001300_150 Hb_001300_150 Hb_002754_010--Hb_001300_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.23959 4.57374 3.51463 7.41076 3.70572 4.41606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.72443 5.03073 7.61056 3.81633 3.03456

CAGE analysis